Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1556

Experiment: m.b. Fusidic 0.0006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1554 and Dshi_1555 are separated by 69 nucleotidesDshi_1555 and Dshi_1556 are separated by 18 nucleotidesDshi_1556 and Dshi_1557 overlap by 14 nucleotidesDshi_1557 and Dshi_1558 overlap by 34 nucleotides Dshi_1554: Dshi_1554 - Hydroxypyruvate isomerase (RefSeq), at 1,616,397 to 1,617,161 _1554 Dshi_1555: Dshi_1555 - transcriptional regulator, XRE family (RefSeq), at 1,617,231 to 1,617,857 _1555 Dshi_1556: Dshi_1556 - AMP-dependent synthetase and ligase (RefSeq), at 1,617,876 to 1,619,435 _1556 Dshi_1557: Dshi_1557 - DSBA oxidoreductase (RefSeq), at 1,619,422 to 1,620,090 _1557 Dshi_1558: Dshi_1558 - hypothetical protein (RefSeq), at 1,620,057 to 1,620,377 _1558 Position (kb) 1617 1618 1619 1620Strain fitness (log2 ratio) -1 0 1at 1617.043 kb on + strand, within Dshi_1554at 1617.373 kb on + strand, within Dshi_1555at 1617.496 kb on - strand, within Dshi_1555at 1617.647 kb on + strand, within Dshi_1555at 1617.689 kb on + strand, within Dshi_1555at 1617.703 kb on + strand, within Dshi_1555at 1617.711 kb on - strand, within Dshi_1555at 1617.711 kb on - strand, within Dshi_1555at 1617.733 kb on - strand, within Dshi_1555at 1617.886 kb on + strandat 1617.940 kb on + strandat 1617.984 kb on + strandat 1617.990 kb on + strandat 1618.402 kb on - strand, within Dshi_1556at 1618.428 kb on - strand, within Dshi_1556at 1618.430 kb on + strand, within Dshi_1556at 1618.713 kb on + strand, within Dshi_1556at 1618.878 kb on + strand, within Dshi_1556at 1618.886 kb on - strand, within Dshi_1556at 1618.939 kb on + strand, within Dshi_1556at 1619.104 kb on + strand, within Dshi_1556at 1619.104 kb on + strand, within Dshi_1556at 1619.233 kb on + strand, within Dshi_1556at 1619.692 kb on + strand, within Dshi_1557at 1619.752 kb on - strand, within Dshi_1557at 1620.354 kb on + strandat 1620.374 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0006 mg/ml
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1,617,043 + Dshi_1554 0.84 +0.6
1,617,373 + Dshi_1555 0.23 +0.5
1,617,496 - Dshi_1555 0.42 +0.2
1,617,647 + Dshi_1555 0.66 -0.1
1,617,689 + Dshi_1555 0.73 +0.3
1,617,703 + Dshi_1555 0.75 -0.3
1,617,711 - Dshi_1555 0.77 -0.9
1,617,711 - Dshi_1555 0.77 +0.5
1,617,733 - Dshi_1555 0.80 +0.4
1,617,886 + -0.6
1,617,940 + +0.1
1,617,984 + +0.3
1,617,990 + +0.2
1,618,402 - Dshi_1556 0.34 +0.2
1,618,428 - Dshi_1556 0.35 +0.3
1,618,430 + Dshi_1556 0.36 -0.4
1,618,713 + Dshi_1556 0.54 -0.5
1,618,878 + Dshi_1556 0.64 +0.0
1,618,886 - Dshi_1556 0.65 +0.8
1,618,939 + Dshi_1556 0.68 +0.1
1,619,104 + Dshi_1556 0.79 +1.2
1,619,104 + Dshi_1556 0.79 +0.4
1,619,233 + Dshi_1556 0.87 -0.3
1,619,692 + Dshi_1557 0.40 -0.1
1,619,752 - Dshi_1557 0.49 -0.8
1,620,354 + +0.6
1,620,374 + -1.0

Or see this region's nucleotide sequence