Experiment: m.b. Fusidic 0.0006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1554 and Dshi_1555 are separated by 69 nucleotides Dshi_1555 and Dshi_1556 are separated by 18 nucleotides Dshi_1556 and Dshi_1557 overlap by 14 nucleotides Dshi_1557 and Dshi_1558 overlap by 34 nucleotides
Dshi_1554: Dshi_1554 - Hydroxypyruvate isomerase (RefSeq), at 1,616,397 to 1,617,161
_1554
Dshi_1555: Dshi_1555 - transcriptional regulator, XRE family (RefSeq), at 1,617,231 to 1,617,857
_1555
Dshi_1556: Dshi_1556 - AMP-dependent synthetase and ligase (RefSeq), at 1,617,876 to 1,619,435
_1556
Dshi_1557: Dshi_1557 - DSBA oxidoreductase (RefSeq), at 1,619,422 to 1,620,090
_1557
Dshi_1558: Dshi_1558 - hypothetical protein (RefSeq), at 1,620,057 to 1,620,377
_1558
Position (kb)
1617
1618
1619
1620 Strain fitness (log2 ratio)
-1
0
1 at 1617.043 kb on + strand, within Dshi_1554 at 1617.373 kb on + strand, within Dshi_1555 at 1617.496 kb on - strand, within Dshi_1555 at 1617.647 kb on + strand, within Dshi_1555 at 1617.689 kb on + strand, within Dshi_1555 at 1617.703 kb on + strand, within Dshi_1555 at 1617.711 kb on - strand, within Dshi_1555 at 1617.711 kb on - strand, within Dshi_1555 at 1617.733 kb on - strand, within Dshi_1555 at 1617.886 kb on + strand at 1617.940 kb on + strand at 1617.984 kb on + strand at 1617.990 kb on + strand at 1618.402 kb on - strand, within Dshi_1556 at 1618.428 kb on - strand, within Dshi_1556 at 1618.430 kb on + strand, within Dshi_1556 at 1618.713 kb on + strand, within Dshi_1556 at 1618.878 kb on + strand, within Dshi_1556 at 1618.886 kb on - strand, within Dshi_1556 at 1618.939 kb on + strand, within Dshi_1556 at 1619.104 kb on + strand, within Dshi_1556 at 1619.104 kb on + strand, within Dshi_1556 at 1619.233 kb on + strand, within Dshi_1556 at 1619.692 kb on + strand, within Dshi_1557 at 1619.752 kb on - strand, within Dshi_1557 at 1620.354 kb on + strand at 1620.374 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0006 mg/ml remove 1,617,043 + Dshi_1554 0.84 +0.6 1,617,373 + Dshi_1555 0.23 +0.5 1,617,496 - Dshi_1555 0.42 +0.2 1,617,647 + Dshi_1555 0.66 -0.1 1,617,689 + Dshi_1555 0.73 +0.3 1,617,703 + Dshi_1555 0.75 -0.3 1,617,711 - Dshi_1555 0.77 -0.9 1,617,711 - Dshi_1555 0.77 +0.5 1,617,733 - Dshi_1555 0.80 +0.4 1,617,886 + -0.6 1,617,940 + +0.1 1,617,984 + +0.3 1,617,990 + +0.2 1,618,402 - Dshi_1556 0.34 +0.2 1,618,428 - Dshi_1556 0.35 +0.3 1,618,430 + Dshi_1556 0.36 -0.4 1,618,713 + Dshi_1556 0.54 -0.5 1,618,878 + Dshi_1556 0.64 +0.0 1,618,886 - Dshi_1556 0.65 +0.8 1,618,939 + Dshi_1556 0.68 +0.1 1,619,104 + Dshi_1556 0.79 +1.2 1,619,104 + Dshi_1556 0.79 +0.4 1,619,233 + Dshi_1556 0.87 -0.3 1,619,692 + Dshi_1557 0.40 -0.1 1,619,752 - Dshi_1557 0.49 -0.8 1,620,354 + +0.6 1,620,374 + -1.0
Or see this region's nucleotide sequence