Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0579

Experiment: m.b. Fusidic 0.0006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0578 and Dshi_0579 are separated by 34 nucleotidesDshi_0579 and Dshi_0580 are separated by 67 nucleotides Dshi_0578: Dshi_0578 - peptidase M19 renal dipeptidase (RefSeq), at 568,174 to 569,184 _0578 Dshi_0579: Dshi_0579 - BCCT transporter (RefSeq), at 569,219 to 570,778 _0579 Dshi_0580: Dshi_0580 - hypothetical protein (RefSeq), at 570,846 to 572,522 _0580 Position (kb) 569 570 571Strain fitness (log2 ratio) -1 0 1 2 3at 568.247 kb on + strandat 568.247 kb on + strandat 568.424 kb on + strand, within Dshi_0578at 568.424 kb on + strand, within Dshi_0578at 568.461 kb on + strand, within Dshi_0578at 568.469 kb on - strand, within Dshi_0578at 568.469 kb on - strand, within Dshi_0578at 568.486 kb on - strand, within Dshi_0578at 568.607 kb on + strand, within Dshi_0578at 568.607 kb on + strand, within Dshi_0578at 568.611 kb on + strand, within Dshi_0578at 568.743 kb on + strand, within Dshi_0578at 568.800 kb on + strand, within Dshi_0578at 568.800 kb on + strand, within Dshi_0578at 568.808 kb on - strand, within Dshi_0578at 568.833 kb on - strand, within Dshi_0578at 568.900 kb on - strand, within Dshi_0578at 568.900 kb on - strand, within Dshi_0578at 568.930 kb on + strand, within Dshi_0578at 568.939 kb on + strand, within Dshi_0578at 568.960 kb on - strand, within Dshi_0578at 568.971 kb on - strand, within Dshi_0578at 568.972 kb on + strand, within Dshi_0578at 569.038 kb on - strand, within Dshi_0578at 569.054 kb on - strand, within Dshi_0578at 569.064 kb on - strand, within Dshi_0578at 569.071 kb on + strand, within Dshi_0578at 569.258 kb on + strandat 569.295 kb on + strandat 569.344 kb on - strandat 569.356 kb on + strandat 569.360 kb on + strandat 569.364 kb on - strandat 569.433 kb on - strand, within Dshi_0579at 569.523 kb on + strand, within Dshi_0579at 569.529 kb on + strand, within Dshi_0579at 569.529 kb on - strand, within Dshi_0579at 569.531 kb on - strand, within Dshi_0579at 569.614 kb on + strand, within Dshi_0579at 569.683 kb on - strand, within Dshi_0579at 569.735 kb on + strand, within Dshi_0579at 569.854 kb on - strand, within Dshi_0579at 569.864 kb on - strand, within Dshi_0579at 569.936 kb on - strand, within Dshi_0579at 569.951 kb on + strand, within Dshi_0579at 570.057 kb on + strand, within Dshi_0579at 570.067 kb on + strand, within Dshi_0579at 570.118 kb on + strand, within Dshi_0579at 570.121 kb on - strand, within Dshi_0579at 570.126 kb on - strand, within Dshi_0579at 570.194 kb on + strand, within Dshi_0579at 570.293 kb on + strand, within Dshi_0579at 570.305 kb on - strand, within Dshi_0579at 570.315 kb on - strand, within Dshi_0579at 570.315 kb on - strand, within Dshi_0579at 570.422 kb on - strand, within Dshi_0579at 570.451 kb on + strand, within Dshi_0579at 570.451 kb on + strand, within Dshi_0579at 570.454 kb on - strand, within Dshi_0579at 570.459 kb on - strand, within Dshi_0579at 570.459 kb on - strand, within Dshi_0579at 570.472 kb on - strand, within Dshi_0579at 570.494 kb on - strand, within Dshi_0579at 570.545 kb on - strandat 570.551 kb on + strand, within Dshi_0579at 570.571 kb on + strand, within Dshi_0579at 570.604 kb on - strand, within Dshi_0579at 570.659 kb on + strandat 570.667 kb on - strandat 570.756 kb on + strandat 570.773 kb on + strandat 570.800 kb on - strandat 570.917 kb on - strandat 570.987 kb on - strandat 571.077 kb on + strand, within Dshi_0580at 571.077 kb on + strand, within Dshi_0580at 571.084 kb on + strand, within Dshi_0580at 571.085 kb on - strand, within Dshi_0580at 571.159 kb on + strand, within Dshi_0580at 571.159 kb on + strand, within Dshi_0580at 571.166 kb on - strand, within Dshi_0580at 571.167 kb on - strand, within Dshi_0580at 571.167 kb on - strand, within Dshi_0580at 571.167 kb on - strand, within Dshi_0580at 571.167 kb on - strand, within Dshi_0580at 571.254 kb on - strand, within Dshi_0580at 571.254 kb on - strand, within Dshi_0580at 571.312 kb on - strand, within Dshi_0580at 571.316 kb on + strand, within Dshi_0580at 571.330 kb on + strand, within Dshi_0580at 571.338 kb on - strand, within Dshi_0580at 571.360 kb on + strand, within Dshi_0580at 571.474 kb on + strand, within Dshi_0580at 571.474 kb on + strand, within Dshi_0580at 571.566 kb on + strand, within Dshi_0580at 571.576 kb on + strand, within Dshi_0580at 571.576 kb on + strand, within Dshi_0580at 571.576 kb on + strand, within Dshi_0580at 571.576 kb on + strand, within Dshi_0580at 571.576 kb on + strand, within Dshi_0580at 571.584 kb on - strand, within Dshi_0580at 571.584 kb on - strand, within Dshi_0580at 571.584 kb on - strand, within Dshi_0580at 571.606 kb on + strand, within Dshi_0580at 571.670 kb on + strand, within Dshi_0580at 571.717 kb on + strand, within Dshi_0580at 571.742 kb on - strand, within Dshi_0580

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0006 mg/ml
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568,247 + -0.1
568,247 + -0.2
568,424 + Dshi_0578 0.25 +1.1
568,424 + Dshi_0578 0.25 +0.4
568,461 + Dshi_0578 0.28 -1.5
568,469 - Dshi_0578 0.29 +0.3
568,469 - Dshi_0578 0.29 +0.2
568,486 - Dshi_0578 0.31 -0.9
568,607 + Dshi_0578 0.43 -0.9
568,607 + Dshi_0578 0.43 +0.3
568,611 + Dshi_0578 0.43 +0.8
568,743 + Dshi_0578 0.56 +0.3
568,800 + Dshi_0578 0.62 +0.5
568,800 + Dshi_0578 0.62 +0.3
568,808 - Dshi_0578 0.63 +0.8
568,833 - Dshi_0578 0.65 -0.6
568,900 - Dshi_0578 0.72 +0.0
568,900 - Dshi_0578 0.72 -0.3
568,930 + Dshi_0578 0.75 +0.4
568,939 + Dshi_0578 0.76 +0.2
568,960 - Dshi_0578 0.78 +0.7
568,971 - Dshi_0578 0.79 +0.6
568,972 + Dshi_0578 0.79 -0.2
569,038 - Dshi_0578 0.85 +0.6
569,054 - Dshi_0578 0.87 +0.4
569,064 - Dshi_0578 0.88 +0.2
569,071 + Dshi_0578 0.89 +0.4
569,258 + -0.5
569,295 + -1.0
569,344 - -0.2
569,356 + +0.2
569,360 + +0.4
569,364 - -0.5
569,433 - Dshi_0579 0.14 -0.5
569,523 + Dshi_0579 0.19 -1.3
569,529 + Dshi_0579 0.20 -0.2
569,529 - Dshi_0579 0.20 -0.7
569,531 - Dshi_0579 0.20 -1.7
569,614 + Dshi_0579 0.25 -0.5
569,683 - Dshi_0579 0.30 +0.8
569,735 + Dshi_0579 0.33 +0.5
569,854 - Dshi_0579 0.41 +0.4
569,864 - Dshi_0579 0.41 +0.3
569,936 - Dshi_0579 0.46 -0.3
569,951 + Dshi_0579 0.47 +0.8
570,057 + Dshi_0579 0.54 -1.2
570,067 + Dshi_0579 0.54 +0.2
570,118 + Dshi_0579 0.58 +1.3
570,121 - Dshi_0579 0.58 +0.2
570,126 - Dshi_0579 0.58 -1.2
570,194 + Dshi_0579 0.62 -0.8
570,293 + Dshi_0579 0.69 +0.5
570,305 - Dshi_0579 0.70 -0.5
570,315 - Dshi_0579 0.70 -0.3
570,315 - Dshi_0579 0.70 -0.8
570,422 - Dshi_0579 0.77 +0.2
570,451 + Dshi_0579 0.79 +0.5
570,451 + Dshi_0579 0.79 -0.0
570,454 - Dshi_0579 0.79 -0.6
570,459 - Dshi_0579 0.79 -0.7
570,459 - Dshi_0579 0.79 -0.5
570,472 - Dshi_0579 0.80 -0.4
570,494 - Dshi_0579 0.82 -0.3
570,545 - +1.1
570,551 + Dshi_0579 0.85 -1.5
570,571 + Dshi_0579 0.87 -0.8
570,604 - Dshi_0579 0.89 +0.5
570,659 + -0.5
570,667 - +0.4
570,756 + -0.9
570,773 + +0.2
570,800 - +3.1
570,917 - -0.3
570,987 - +1.1
571,077 + Dshi_0580 0.14 +0.2
571,077 + Dshi_0580 0.14 +0.1
571,084 + Dshi_0580 0.14 -0.9
571,085 - Dshi_0580 0.14 +0.2
571,159 + Dshi_0580 0.19 +0.1
571,159 + Dshi_0580 0.19 +0.5
571,166 - Dshi_0580 0.19 -1.5
571,167 - Dshi_0580 0.19 -0.4
571,167 - Dshi_0580 0.19 +0.1
571,167 - Dshi_0580 0.19 -0.6
571,167 - Dshi_0580 0.19 -0.3
571,254 - Dshi_0580 0.24 +0.1
571,254 - Dshi_0580 0.24 +0.5
571,312 - Dshi_0580 0.28 +0.2
571,316 + Dshi_0580 0.28 +0.3
571,330 + Dshi_0580 0.29 -0.2
571,338 - Dshi_0580 0.29 +0.2
571,360 + Dshi_0580 0.31 -0.9
571,474 + Dshi_0580 0.37 -0.3
571,474 + Dshi_0580 0.37 -0.1
571,566 + Dshi_0580 0.43 -0.3
571,576 + Dshi_0580 0.44 -1.0
571,576 + Dshi_0580 0.44 +0.1
571,576 + Dshi_0580 0.44 +0.0
571,576 + Dshi_0580 0.44 -1.5
571,576 + Dshi_0580 0.44 -0.1
571,584 - Dshi_0580 0.44 +0.4
571,584 - Dshi_0580 0.44 +0.5
571,584 - Dshi_0580 0.44 +1.0
571,606 + Dshi_0580 0.45 +0.3
571,670 + Dshi_0580 0.49 +0.1
571,717 + Dshi_0580 0.52 +0.4
571,742 - Dshi_0580 0.53 -1.1

Or see this region's nucleotide sequence