Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0578

Experiment: m.b. Fusidic 0.0006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0577 and Dshi_0578 overlap by 4 nucleotidesDshi_0578 and Dshi_0579 are separated by 34 nucleotides Dshi_0577: Dshi_0577 - aldehyde dehydrogenase (RefSeq), at 566,726 to 568,177 _0577 Dshi_0578: Dshi_0578 - peptidase M19 renal dipeptidase (RefSeq), at 568,174 to 569,184 _0578 Dshi_0579: Dshi_0579 - BCCT transporter (RefSeq), at 569,219 to 570,778 _0579 Position (kb) 568 569 570Strain fitness (log2 ratio) -2 -1 0 1at 567.184 kb on + strand, within Dshi_0577at 567.217 kb on + strand, within Dshi_0577at 567.275 kb on + strand, within Dshi_0577at 567.275 kb on + strand, within Dshi_0577at 567.278 kb on - strand, within Dshi_0577at 567.315 kb on - strand, within Dshi_0577at 567.317 kb on - strand, within Dshi_0577at 567.319 kb on + strand, within Dshi_0577at 567.319 kb on + strand, within Dshi_0577at 567.325 kb on - strand, within Dshi_0577at 567.327 kb on - strand, within Dshi_0577at 567.327 kb on - strand, within Dshi_0577at 567.360 kb on + strand, within Dshi_0577at 567.361 kb on - strand, within Dshi_0577at 567.387 kb on + strand, within Dshi_0577at 567.392 kb on + strand, within Dshi_0577at 567.510 kb on + strand, within Dshi_0577at 567.529 kb on - strand, within Dshi_0577at 567.534 kb on - strand, within Dshi_0577at 567.589 kb on + strand, within Dshi_0577at 567.590 kb on + strand, within Dshi_0577at 567.590 kb on + strand, within Dshi_0577at 567.598 kb on - strand, within Dshi_0577at 567.598 kb on - strand, within Dshi_0577at 567.654 kb on - strand, within Dshi_0577at 567.666 kb on + strand, within Dshi_0577at 567.667 kb on - strand, within Dshi_0577at 567.676 kb on - strand, within Dshi_0577at 567.723 kb on + strand, within Dshi_0577at 567.751 kb on - strand, within Dshi_0577at 567.756 kb on - strand, within Dshi_0577at 567.761 kb on + strand, within Dshi_0577at 567.761 kb on + strand, within Dshi_0577at 567.766 kb on + strand, within Dshi_0577at 567.808 kb on + strand, within Dshi_0577at 567.888 kb on - strand, within Dshi_0577at 567.925 kb on - strand, within Dshi_0577at 567.960 kb on + strand, within Dshi_0577at 568.089 kb on + strandat 568.138 kb on + strandat 568.155 kb on - strandat 568.176 kb on - strandat 568.247 kb on + strandat 568.247 kb on + strandat 568.424 kb on + strand, within Dshi_0578at 568.424 kb on + strand, within Dshi_0578at 568.461 kb on + strand, within Dshi_0578at 568.469 kb on - strand, within Dshi_0578at 568.469 kb on - strand, within Dshi_0578at 568.486 kb on - strand, within Dshi_0578at 568.607 kb on + strand, within Dshi_0578at 568.607 kb on + strand, within Dshi_0578at 568.611 kb on + strand, within Dshi_0578at 568.743 kb on + strand, within Dshi_0578at 568.800 kb on + strand, within Dshi_0578at 568.800 kb on + strand, within Dshi_0578at 568.808 kb on - strand, within Dshi_0578at 568.833 kb on - strand, within Dshi_0578at 568.900 kb on - strand, within Dshi_0578at 568.900 kb on - strand, within Dshi_0578at 568.930 kb on + strand, within Dshi_0578at 568.939 kb on + strand, within Dshi_0578at 568.960 kb on - strand, within Dshi_0578at 568.971 kb on - strand, within Dshi_0578at 568.972 kb on + strand, within Dshi_0578at 569.038 kb on - strand, within Dshi_0578at 569.054 kb on - strand, within Dshi_0578at 569.064 kb on - strand, within Dshi_0578at 569.071 kb on + strand, within Dshi_0578at 569.258 kb on + strandat 569.295 kb on + strandat 569.344 kb on - strandat 569.356 kb on + strandat 569.360 kb on + strandat 569.364 kb on - strandat 569.433 kb on - strand, within Dshi_0579at 569.523 kb on + strand, within Dshi_0579at 569.529 kb on + strand, within Dshi_0579at 569.529 kb on - strand, within Dshi_0579at 569.531 kb on - strand, within Dshi_0579at 569.614 kb on + strand, within Dshi_0579at 569.683 kb on - strand, within Dshi_0579at 569.735 kb on + strand, within Dshi_0579at 569.854 kb on - strand, within Dshi_0579at 569.864 kb on - strand, within Dshi_0579at 569.936 kb on - strand, within Dshi_0579at 569.951 kb on + strand, within Dshi_0579at 570.057 kb on + strand, within Dshi_0579at 570.067 kb on + strand, within Dshi_0579at 570.118 kb on + strand, within Dshi_0579at 570.121 kb on - strand, within Dshi_0579at 570.126 kb on - strand, within Dshi_0579

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0006 mg/ml
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567,184 + Dshi_0577 0.32 +1.0
567,217 + Dshi_0577 0.34 -0.7
567,275 + Dshi_0577 0.38 -0.2
567,275 + Dshi_0577 0.38 -0.6
567,278 - Dshi_0577 0.38 +0.4
567,315 - Dshi_0577 0.41 -0.1
567,317 - Dshi_0577 0.41 +0.5
567,319 + Dshi_0577 0.41 +0.1
567,319 + Dshi_0577 0.41 +1.1
567,325 - Dshi_0577 0.41 -0.1
567,327 - Dshi_0577 0.41 +0.4
567,327 - Dshi_0577 0.41 +0.4
567,360 + Dshi_0577 0.44 -1.5
567,361 - Dshi_0577 0.44 -0.3
567,387 + Dshi_0577 0.46 +0.3
567,392 + Dshi_0577 0.46 -0.8
567,510 + Dshi_0577 0.54 -0.8
567,529 - Dshi_0577 0.55 -0.2
567,534 - Dshi_0577 0.56 +0.9
567,589 + Dshi_0577 0.59 +0.5
567,590 + Dshi_0577 0.60 -0.7
567,590 + Dshi_0577 0.60 +0.2
567,598 - Dshi_0577 0.60 +0.3
567,598 - Dshi_0577 0.60 -0.1
567,654 - Dshi_0577 0.64 +0.1
567,666 + Dshi_0577 0.65 -0.1
567,667 - Dshi_0577 0.65 -0.1
567,676 - Dshi_0577 0.65 -2.1
567,723 + Dshi_0577 0.69 -0.7
567,751 - Dshi_0577 0.71 -0.8
567,756 - Dshi_0577 0.71 +0.4
567,761 + Dshi_0577 0.71 -0.1
567,761 + Dshi_0577 0.71 -1.9
567,766 + Dshi_0577 0.72 +0.3
567,808 + Dshi_0577 0.75 +1.7
567,888 - Dshi_0577 0.80 -0.7
567,925 - Dshi_0577 0.83 +0.2
567,960 + Dshi_0577 0.85 +1.1
568,089 + -0.5
568,138 + +0.4
568,155 - +0.3
568,176 - -0.7
568,247 + -0.1
568,247 + -0.2
568,424 + Dshi_0578 0.25 +1.1
568,424 + Dshi_0578 0.25 +0.4
568,461 + Dshi_0578 0.28 -1.5
568,469 - Dshi_0578 0.29 +0.3
568,469 - Dshi_0578 0.29 +0.2
568,486 - Dshi_0578 0.31 -0.9
568,607 + Dshi_0578 0.43 -0.9
568,607 + Dshi_0578 0.43 +0.3
568,611 + Dshi_0578 0.43 +0.8
568,743 + Dshi_0578 0.56 +0.3
568,800 + Dshi_0578 0.62 +0.5
568,800 + Dshi_0578 0.62 +0.3
568,808 - Dshi_0578 0.63 +0.8
568,833 - Dshi_0578 0.65 -0.6
568,900 - Dshi_0578 0.72 +0.0
568,900 - Dshi_0578 0.72 -0.3
568,930 + Dshi_0578 0.75 +0.4
568,939 + Dshi_0578 0.76 +0.2
568,960 - Dshi_0578 0.78 +0.7
568,971 - Dshi_0578 0.79 +0.6
568,972 + Dshi_0578 0.79 -0.2
569,038 - Dshi_0578 0.85 +0.6
569,054 - Dshi_0578 0.87 +0.4
569,064 - Dshi_0578 0.88 +0.2
569,071 + Dshi_0578 0.89 +0.4
569,258 + -0.5
569,295 + -1.0
569,344 - -0.2
569,356 + +0.2
569,360 + +0.4
569,364 - -0.5
569,433 - Dshi_0579 0.14 -0.5
569,523 + Dshi_0579 0.19 -1.3
569,529 + Dshi_0579 0.20 -0.2
569,529 - Dshi_0579 0.20 -0.7
569,531 - Dshi_0579 0.20 -1.7
569,614 + Dshi_0579 0.25 -0.5
569,683 - Dshi_0579 0.30 +0.8
569,735 + Dshi_0579 0.33 +0.5
569,854 - Dshi_0579 0.41 +0.4
569,864 - Dshi_0579 0.41 +0.3
569,936 - Dshi_0579 0.46 -0.3
569,951 + Dshi_0579 0.47 +0.8
570,057 + Dshi_0579 0.54 -1.2
570,067 + Dshi_0579 0.54 +0.2
570,118 + Dshi_0579 0.58 +1.3
570,121 - Dshi_0579 0.58 +0.2
570,126 - Dshi_0579 0.58 -1.2

Or see this region's nucleotide sequence