Experiment: m.b. Fusidic 0.0006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0041 and Dshi_0042 overlap by 4 nucleotides Dshi_0042 and Dshi_0043 are separated by 86 nucleotides Dshi_0043 and Dshi_0044 are separated by 300 nucleotides Dshi_0044 and Dshi_0045 are separated by 6 nucleotides
Dshi_0041: Dshi_0041 - hypothetical protein (RefSeq), at 42,669 to 43,163
_0041
Dshi_0042: Dshi_0042 - alanine racemase domain protein (RefSeq), at 43,160 to 43,816
_0042
Dshi_0043: Dshi_0043 - hypothetical protein (RefSeq), at 43,903 to 44,862
_0043
Dshi_0044: Dshi_0044 - hypothetical protein (RefSeq), at 45,163 to 45,633
_0044
Dshi_0045: Dshi_0045 - UspA domain protein (RefSeq), at 45,640 to 46,014
_0045
Position (kb) 43
44
45 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 42.903 kb on + strand, within Dshi_0041 at 42.916 kb on + strand, within Dshi_0041 at 43.007 kb on - strand, within Dshi_0041 at 43.107 kb on + strand, within Dshi_0041 at 43.168 kb on + strand at 43.333 kb on + strand, within Dshi_0042 at 43.366 kb on + strand, within Dshi_0042 at 43.470 kb on - strand, within Dshi_0042 at 43.501 kb on + strand, within Dshi_0042 at 43.698 kb on + strand, within Dshi_0042 at 43.782 kb on + strand at 43.782 kb on + strand at 45.114 kb on + strand at 45.122 kb on - strand at 45.156 kb on - strand at 45.156 kb on - strand at 45.199 kb on - strand at 45.204 kb on - strand at 45.235 kb on - strand, within Dshi_0044 at 45.235 kb on - strand, within Dshi_0044 at 45.333 kb on - strand, within Dshi_0044 at 45.360 kb on - strand, within Dshi_0044 at 45.430 kb on - strand, within Dshi_0044 at 45.444 kb on - strand, within Dshi_0044 at 45.451 kb on + strand, within Dshi_0044 at 45.473 kb on - strand, within Dshi_0044 at 45.495 kb on - strand, within Dshi_0044 at 45.540 kb on + strand, within Dshi_0044 at 45.540 kb on + strand, within Dshi_0044 at 45.673 kb on + strand at 45.683 kb on + strand, within Dshi_0045 at 45.691 kb on - strand, within Dshi_0045 at 45.712 kb on + strand, within Dshi_0045 at 45.760 kb on - strand, within Dshi_0045 at 45.783 kb on - strand, within Dshi_0045
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0006 mg/ml remove 42,903 + Dshi_0041 0.47 +0.4 42,916 + Dshi_0041 0.50 -0.8 43,007 - Dshi_0041 0.68 +0.6 43,107 + Dshi_0041 0.88 -0.2 43,168 + -0.7 43,333 + Dshi_0042 0.26 +0.4 43,366 + Dshi_0042 0.31 +1.5 43,470 - Dshi_0042 0.47 +0.6 43,501 + Dshi_0042 0.52 +0.6 43,698 + Dshi_0042 0.82 +1.9 43,782 + -0.1 43,782 + -0.1 45,114 + +1.2 45,122 - -0.6 45,156 - -2.3 45,156 - -0.8 45,199 - +1.2 45,204 - +0.2 45,235 - Dshi_0044 0.15 -1.8 45,235 - Dshi_0044 0.15 -1.5 45,333 - Dshi_0044 0.36 -2.4 45,360 - Dshi_0044 0.42 -0.4 45,430 - Dshi_0044 0.57 -3.8 45,444 - Dshi_0044 0.60 -3.2 45,451 + Dshi_0044 0.61 -1.8 45,473 - Dshi_0044 0.66 -2.5 45,495 - Dshi_0044 0.70 -0.6 45,540 + Dshi_0044 0.80 -1.1 45,540 + Dshi_0044 0.80 -3.4 45,673 + -0.7 45,683 + Dshi_0045 0.11 +0.2 45,691 - Dshi_0045 0.14 -0.2 45,712 + Dshi_0045 0.19 -1.5 45,760 - Dshi_0045 0.32 +0.7 45,783 - Dshi_0045 0.38 +0.8
Or see this region's nucleotide sequence