Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0100

Experiment: MoYLS4 with FCCP 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0099 and DVU0100 are separated by 296 nucleotidesDVU0100 and DVU0101 are separated by 110 nucleotides DVU0099: DVU0099 - TonB domain protein (TIGR), at 129,890 to 131,050 DVU0099 DVU0100: DVU0100 - TonB-dependent receptor (TIGR), at 131,347 to 133,296 DVU0100 DVU0101: DVU0101 - methlytransferase, UbiE/COQ5 family (TIGR), at 133,407 to 134,933 DVU0101 Position (kb) 131 132 133 134Strain fitness (log2 ratio) -2 -1 0 1at 130.366 kb on - strand, within DVU0099at 130.635 kb on - strand, within DVU0099at 130.635 kb on - strand, within DVU0099at 130.635 kb on - strand, within DVU0099at 130.697 kb on + strand, within DVU0099at 130.697 kb on + strand, within DVU0099at 130.697 kb on + strand, within DVU0099at 130.697 kb on + strand, within DVU0099at 130.702 kb on + strand, within DVU0099at 130.705 kb on - strand, within DVU0099at 130.705 kb on - strand, within DVU0099at 130.710 kb on - strand, within DVU0099at 130.710 kb on - strand, within DVU0099at 130.710 kb on - strand, within DVU0099at 130.720 kb on + strand, within DVU0099at 130.721 kb on - strand, within DVU0099at 130.767 kb on + strand, within DVU0099at 130.772 kb on + strand, within DVU0099at 130.837 kb on + strand, within DVU0099at 130.863 kb on + strand, within DVU0099at 130.878 kb on - strand, within DVU0099at 130.931 kb on - strand, within DVU0099at 130.933 kb on + strand, within DVU0099at 130.995 kb on - strandat 131.013 kb on + strandat 131.068 kb on - strandat 131.173 kb on + strandat 131.181 kb on - strandat 131.194 kb on + strandat 131.388 kb on + strandat 131.396 kb on - strandat 131.512 kb on + strandat 131.512 kb on + strandat 131.513 kb on - strandat 131.539 kb on - strandat 131.557 kb on + strand, within DVU0100at 131.565 kb on + strand, within DVU0100at 131.603 kb on + strand, within DVU0100at 131.680 kb on - strand, within DVU0100at 131.732 kb on - strand, within DVU0100at 131.732 kb on - strand, within DVU0100at 131.734 kb on + strand, within DVU0100at 131.737 kb on - strand, within DVU0100at 131.742 kb on - strand, within DVU0100at 131.781 kb on + strand, within DVU0100at 131.789 kb on - strand, within DVU0100at 131.793 kb on + strand, within DVU0100at 131.793 kb on + strand, within DVU0100at 131.871 kb on - strand, within DVU0100at 131.935 kb on - strand, within DVU0100at 131.949 kb on + strand, within DVU0100at 131.957 kb on - strand, within DVU0100at 131.976 kb on + strand, within DVU0100at 131.976 kb on + strand, within DVU0100at 131.976 kb on + strand, within DVU0100at 132.047 kb on + strand, within DVU0100at 132.057 kb on + strand, within DVU0100at 132.150 kb on + strand, within DVU0100at 132.224 kb on - strand, within DVU0100at 132.256 kb on + strand, within DVU0100at 132.264 kb on - strand, within DVU0100at 132.413 kb on + strand, within DVU0100at 132.618 kb on - strand, within DVU0100at 132.645 kb on - strand, within DVU0100at 132.645 kb on - strand, within DVU0100at 132.795 kb on + strand, within DVU0100at 132.836 kb on - strand, within DVU0100at 132.874 kb on + strand, within DVU0100at 132.889 kb on - strand, within DVU0100at 132.897 kb on + strand, within DVU0100at 132.905 kb on - strand, within DVU0100at 132.905 kb on - strand, within DVU0100at 132.953 kb on - strand, within DVU0100at 133.016 kb on + strand, within DVU0100at 133.050 kb on + strand, within DVU0100at 133.060 kb on + strand, within DVU0100at 133.077 kb on - strand, within DVU0100at 133.199 kb on - strandat 133.206 kb on + strandat 133.310 kb on + strandat 133.336 kb on + strandat 133.406 kb on + strandat 133.533 kb on - strandat 133.624 kb on - strand, within DVU0101at 133.640 kb on + strand, within DVU0101at 133.641 kb on - strand, within DVU0101at 133.696 kb on - strand, within DVU0101at 133.712 kb on + strand, within DVU0101at 133.759 kb on - strand, within DVU0101at 133.763 kb on + strand, within DVU0101at 133.797 kb on + strand, within DVU0101at 133.933 kb on + strand, within DVU0101at 133.959 kb on - strand, within DVU0101at 133.993 kb on + strand, within DVU0101at 134.001 kb on - strand, within DVU0101at 134.011 kb on + strand, within DVU0101at 134.019 kb on - strand, within DVU0101at 134.127 kb on + strand, within DVU0101at 134.127 kb on + strand, within DVU0101at 134.146 kb on + strand, within DVU0101at 134.162 kb on - strand, within DVU0101at 134.246 kb on - strand, within DVU0101

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with FCCP 10uM
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130,366 - DVU0099 0.41 +0.9
130,635 - DVU0099 0.64 -0.6
130,635 - DVU0099 0.64 +1.4
130,635 - DVU0099 0.64 +0.3
130,697 + DVU0099 0.70 +0.9
130,697 + DVU0099 0.70 -0.5
130,697 + DVU0099 0.70 +0.5
130,697 + DVU0099 0.70 -0.4
130,702 + DVU0099 0.70 +0.6
130,705 - DVU0099 0.70 -0.5
130,705 - DVU0099 0.70 -0.3
130,710 - DVU0099 0.71 -0.6
130,710 - DVU0099 0.71 +0.0
130,710 - DVU0099 0.71 -0.0
130,720 + DVU0099 0.71 +0.9
130,721 - DVU0099 0.72 +1.2
130,767 + DVU0099 0.76 -0.5
130,772 + DVU0099 0.76 -0.4
130,837 + DVU0099 0.82 -1.2
130,863 + DVU0099 0.84 +0.3
130,878 - DVU0099 0.85 -0.6
130,931 - DVU0099 0.90 +1.4
130,933 + DVU0099 0.90 -0.2
130,995 - +0.4
131,013 + -0.2
131,068 - -0.2
131,173 + -1.4
131,181 - +0.0
131,194 + +0.4
131,388 + +0.5
131,396 - +0.2
131,512 + -0.1
131,512 + -0.1
131,513 - -0.2
131,539 - -0.2
131,557 + DVU0100 0.11 -2.6
131,565 + DVU0100 0.11 -0.2
131,603 + DVU0100 0.13 -2.2
131,680 - DVU0100 0.17 +0.5
131,732 - DVU0100 0.20 +0.3
131,732 - DVU0100 0.20 +0.4
131,734 + DVU0100 0.20 +0.2
131,737 - DVU0100 0.20 +0.2
131,742 - DVU0100 0.20 +0.0
131,781 + DVU0100 0.22 +0.8
131,789 - DVU0100 0.23 -0.0
131,793 + DVU0100 0.23 -0.7
131,793 + DVU0100 0.23 +0.2
131,871 - DVU0100 0.27 +0.3
131,935 - DVU0100 0.30 +0.3
131,949 + DVU0100 0.31 +0.3
131,957 - DVU0100 0.31 +0.4
131,976 + DVU0100 0.32 +0.4
131,976 + DVU0100 0.32 +0.1
131,976 + DVU0100 0.32 +0.0
132,047 + DVU0100 0.36 +0.1
132,057 + DVU0100 0.36 -0.5
132,150 + DVU0100 0.41 -0.3
132,224 - DVU0100 0.45 +0.6
132,256 + DVU0100 0.47 +0.4
132,264 - DVU0100 0.47 -0.3
132,413 + DVU0100 0.55 -1.2
132,618 - DVU0100 0.65 +0.0
132,645 - DVU0100 0.67 -1.2
132,645 - DVU0100 0.67 +0.2
132,795 + DVU0100 0.74 -0.0
132,836 - DVU0100 0.76 -0.1
132,874 + DVU0100 0.78 +0.2
132,889 - DVU0100 0.79 +0.4
132,897 + DVU0100 0.79 -1.0
132,905 - DVU0100 0.80 -0.1
132,905 - DVU0100 0.80 +0.4
132,953 - DVU0100 0.82 -0.6
133,016 + DVU0100 0.86 -0.1
133,050 + DVU0100 0.87 +1.3
133,060 + DVU0100 0.88 +0.4
133,077 - DVU0100 0.89 -0.0
133,199 - +0.2
133,206 + -0.1
133,310 + +0.9
133,336 + +0.0
133,406 + -0.3
133,533 - +1.4
133,624 - DVU0101 0.14 -0.8
133,640 + DVU0101 0.15 -0.2
133,641 - DVU0101 0.15 +0.1
133,696 - DVU0101 0.19 +0.1
133,712 + DVU0101 0.20 -0.2
133,759 - DVU0101 0.23 -0.1
133,763 + DVU0101 0.23 -0.6
133,797 + DVU0101 0.26 +0.4
133,933 + DVU0101 0.34 -0.7
133,959 - DVU0101 0.36 +1.4
133,993 + DVU0101 0.38 -0.5
134,001 - DVU0101 0.39 +0.2
134,011 + DVU0101 0.40 -0.9
134,019 - DVU0101 0.40 -0.9
134,127 + DVU0101 0.47 -0.0
134,127 + DVU0101 0.47 +0.2
134,146 + DVU0101 0.48 +0.4
134,162 - DVU0101 0.49 +0.7
134,246 - DVU0101 0.55 +0.0

Or see this region's nucleotide sequence