Experiment: MoYLS4 with FCCP 10uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1778 and DVU1779 are separated by 53 nucleotides DVU1779 and DVU1780 are separated by 55 nucleotides DVU1780 and DVU1781 are separated by 184 nucleotides DVU1781 and DVU1782 overlap by 8 nucleotides
DVU1778: DVU1778 - cation efflux family protein (TIGR), at 1,841,677 to 1,843,122
DVU1778
DVU1779: DVU1779 - hypothetical protein (TIGR), at 1,843,176 to 1,843,382
DVU1779
DVU1780: DVU1780 - conserved hypothetical protein (TIGR), at 1,843,438 to 1,843,743
DVU1780
DVU1781: DVU1781 - conserved hypothetical protein (TIGR), at 1,843,928 to 1,844,593
DVU1781
DVU1782: DVU1782 - iron-sulfur cluster-binding protein (TIGR), at 1,844,586 to 1,846,013
DVU1782
Position (kb)
1843
1844 Strain fitness (log2 ratio)
-2
-1
0
1 at 1842.541 kb on - strand, within DVU1778 at 1842.582 kb on - strand, within DVU1778 at 1842.601 kb on - strand, within DVU1778 at 1842.625 kb on - strand, within DVU1778 at 1842.821 kb on - strand, within DVU1778 at 1842.873 kb on - strand, within DVU1778 at 1842.945 kb on - strand, within DVU1778 at 1842.967 kb on + strand, within DVU1778 at 1843.083 kb on - strand at 1843.126 kb on - strand at 1843.391 kb on + strand at 1843.396 kb on + strand at 1843.438 kb on - strand at 1843.480 kb on - strand, within DVU1780 at 1843.508 kb on - strand, within DVU1780 at 1843.510 kb on - strand, within DVU1780 at 1843.605 kb on + strand, within DVU1780 at 1843.611 kb on + strand, within DVU1780 at 1843.693 kb on - strand, within DVU1780 at 1843.712 kb on - strand, within DVU1780 at 1843.714 kb on - strand at 1843.722 kb on - strand at 1843.722 kb on - strand at 1843.754 kb on + strand at 1843.799 kb on + strand at 1843.909 kb on + strand at 1843.971 kb on + strand at 1844.002 kb on + strand, within DVU1781 at 1844.011 kb on + strand, within DVU1781 at 1844.068 kb on + strand, within DVU1781 at 1844.079 kb on + strand, within DVU1781 at 1844.113 kb on - strand, within DVU1781 at 1844.168 kb on + strand, within DVU1781 at 1844.176 kb on - strand, within DVU1781 at 1844.201 kb on - strand, within DVU1781 at 1844.303 kb on - strand, within DVU1781 at 1844.319 kb on + strand, within DVU1781 at 1844.345 kb on + strand, within DVU1781 at 1844.388 kb on + strand, within DVU1781 at 1844.409 kb on + strand, within DVU1781 at 1844.444 kb on - strand, within DVU1781 at 1844.596 kb on - strand at 1844.596 kb on - strand at 1844.618 kb on + strand at 1844.664 kb on + strand at 1844.681 kb on + strand at 1844.681 kb on + strand at 1844.691 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with FCCP 10uM remove 1,842,541 - DVU1778 0.60 +0.5 1,842,582 - DVU1778 0.63 -0.6 1,842,601 - DVU1778 0.64 -0.7 1,842,625 - DVU1778 0.66 -0.2 1,842,821 - DVU1778 0.79 +0.3 1,842,873 - DVU1778 0.83 -0.3 1,842,945 - DVU1778 0.88 -1.0 1,842,967 + DVU1778 0.89 -0.4 1,843,083 - -1.9 1,843,126 - -0.8 1,843,391 + -0.3 1,843,396 + +0.7 1,843,438 - -0.4 1,843,480 - DVU1780 0.14 -0.2 1,843,508 - DVU1780 0.23 -0.6 1,843,510 - DVU1780 0.24 -0.3 1,843,605 + DVU1780 0.55 +0.1 1,843,611 + DVU1780 0.57 +0.2 1,843,693 - DVU1780 0.83 -0.3 1,843,712 - DVU1780 0.90 +0.3 1,843,714 - +0.4 1,843,722 - -0.2 1,843,722 - -1.3 1,843,754 + -0.2 1,843,799 + -0.0 1,843,909 + -0.4 1,843,971 + -0.1 1,844,002 + DVU1781 0.11 -0.9 1,844,011 + DVU1781 0.12 +0.1 1,844,068 + DVU1781 0.21 +0.1 1,844,079 + DVU1781 0.23 +1.1 1,844,113 - DVU1781 0.28 -0.6 1,844,168 + DVU1781 0.36 -0.3 1,844,176 - DVU1781 0.37 -0.6 1,844,201 - DVU1781 0.41 +0.3 1,844,303 - DVU1781 0.56 -0.3 1,844,319 + DVU1781 0.59 -1.1 1,844,345 + DVU1781 0.63 -0.7 1,844,388 + DVU1781 0.69 -0.5 1,844,409 + DVU1781 0.72 -1.3 1,844,444 - DVU1781 0.77 -0.8 1,844,596 - -0.8 1,844,596 - -0.1 1,844,618 + -0.7 1,844,664 + -0.5 1,844,681 + -0.6 1,844,681 + -1.1 1,844,691 + +0.2
Or see this region's nucleotide sequence