Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1081

Experiment: MoYLS4 with FCCP 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttrmE and DVU1080 are separated by 318 nucleotidesDVU1080 and DVU1081 overlap by 4 nucleotidesDVU1081 and DVU1082 are separated by 116 nucleotidesDVU1082 and phoB are separated by 173 nucleotides DVU1079: trmE - tRNA modification GTPase TrmE (TIGR), at 1,182,378 to 1,183,751 trmE DVU1080: DVU1080 - iron-sulfur cluster-binding protein (TIGR), at 1,184,070 to 1,184,612 DVU1080 DVU1081: DVU1081 - iron-sulfur cluster-binding protein (TIGR), at 1,184,609 to 1,186,228 DVU1081 DVU1082: DVU1082 - 3- 5 exonuclease domain protein (TIGR), at 1,186,345 to 1,186,953 DVU1082 DVU1083: phoB - phosphate regulon transcriptional regulator PhoB (TIGR), at 1,187,127 to 1,187,816 phoB Position (kb) 1184 1185 1186 1187Strain fitness (log2 ratio) -2 -1 0 1 2at 1183.679 kb on - strandat 1183.949 kb on - strandat 1183.949 kb on - strandat 1184.102 kb on - strandat 1184.212 kb on + strand, within DVU1080at 1184.218 kb on - strand, within DVU1080at 1184.243 kb on + strand, within DVU1080at 1184.583 kb on + strandat 1184.597 kb on + strandat 1184.597 kb on + strandat 1184.605 kb on + strandat 1184.605 kb on - strandat 1184.605 kb on - strandat 1184.605 kb on - strandat 1184.605 kb on - strandat 1184.605 kb on - strandat 1184.681 kb on - strandat 1184.691 kb on - strandat 1184.725 kb on + strandat 1184.725 kb on + strandat 1184.733 kb on - strandat 1184.759 kb on + strandat 1184.888 kb on + strand, within DVU1081at 1184.888 kb on + strand, within DVU1081at 1184.891 kb on - strand, within DVU1081at 1184.967 kb on + strand, within DVU1081at 1184.975 kb on - strand, within DVU1081at 1185.001 kb on - strand, within DVU1081at 1185.030 kb on - strand, within DVU1081at 1185.046 kb on - strand, within DVU1081at 1185.057 kb on + strand, within DVU1081at 1185.070 kb on + strand, within DVU1081at 1185.166 kb on - strand, within DVU1081at 1185.178 kb on + strand, within DVU1081at 1185.199 kb on - strand, within DVU1081at 1185.230 kb on - strand, within DVU1081at 1185.245 kb on + strand, within DVU1081at 1185.250 kb on + strand, within DVU1081at 1185.258 kb on - strand, within DVU1081at 1185.319 kb on + strand, within DVU1081at 1185.348 kb on - strand, within DVU1081at 1185.355 kb on + strand, within DVU1081at 1185.392 kb on + strand, within DVU1081at 1185.576 kb on + strand, within DVU1081at 1185.591 kb on + strand, within DVU1081at 1185.619 kb on + strand, within DVU1081at 1185.627 kb on - strand, within DVU1081at 1185.707 kb on + strand, within DVU1081at 1185.707 kb on + strand, within DVU1081at 1185.717 kb on - strand, within DVU1081at 1185.738 kb on + strand, within DVU1081at 1185.797 kb on + strand, within DVU1081at 1185.857 kb on + strand, within DVU1081at 1185.933 kb on + strand, within DVU1081at 1185.933 kb on + strand, within DVU1081at 1185.941 kb on - strand, within DVU1081at 1186.018 kb on + strand, within DVU1081at 1186.085 kb on - strandat 1186.487 kb on + strand, within DVU1082at 1186.621 kb on - strand, within DVU1082at 1186.835 kb on + strand, within DVU1082at 1186.843 kb on - strand, within DVU1082at 1186.858 kb on - strand, within DVU1082at 1187.052 kb on + strandat 1187.064 kb on + strandat 1187.118 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with FCCP 10uM
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1,183,679 - -0.9
1,183,949 - +0.1
1,183,949 - +0.5
1,184,102 - -0.2
1,184,212 + DVU1080 0.26 +0.7
1,184,218 - DVU1080 0.27 -0.3
1,184,243 + DVU1080 0.32 -0.3
1,184,583 + -0.6
1,184,597 + -0.5
1,184,597 + -0.5
1,184,605 + -0.4
1,184,605 - -0.2
1,184,605 - -1.9
1,184,605 - -1.3
1,184,605 - +0.7
1,184,605 - +0.7
1,184,681 - -0.4
1,184,691 - +0.1
1,184,725 + +0.4
1,184,725 + -0.1
1,184,733 - -0.1
1,184,759 + +0.1
1,184,888 + DVU1081 0.17 -1.9
1,184,888 + DVU1081 0.17 -0.1
1,184,891 - DVU1081 0.17 +1.1
1,184,967 + DVU1081 0.22 +0.7
1,184,975 - DVU1081 0.23 +0.1
1,185,001 - DVU1081 0.24 +0.7
1,185,030 - DVU1081 0.26 -0.0
1,185,046 - DVU1081 0.27 +0.7
1,185,057 + DVU1081 0.28 +0.8
1,185,070 + DVU1081 0.28 +0.2
1,185,166 - DVU1081 0.34 +0.3
1,185,178 + DVU1081 0.35 -0.2
1,185,199 - DVU1081 0.36 +0.7
1,185,230 - DVU1081 0.38 -0.4
1,185,245 + DVU1081 0.39 -0.1
1,185,250 + DVU1081 0.40 +0.4
1,185,258 - DVU1081 0.40 -1.3
1,185,319 + DVU1081 0.44 +1.2
1,185,348 - DVU1081 0.46 -0.3
1,185,355 + DVU1081 0.46 -0.3
1,185,392 + DVU1081 0.48 -1.3
1,185,576 + DVU1081 0.60 -0.2
1,185,591 + DVU1081 0.61 -1.5
1,185,619 + DVU1081 0.62 -0.7
1,185,627 - DVU1081 0.63 -0.3
1,185,707 + DVU1081 0.68 +0.3
1,185,707 + DVU1081 0.68 +0.4
1,185,717 - DVU1081 0.68 +1.2
1,185,738 + DVU1081 0.70 +1.7
1,185,797 + DVU1081 0.73 +0.7
1,185,857 + DVU1081 0.77 +0.7
1,185,933 + DVU1081 0.82 -0.2
1,185,933 + DVU1081 0.82 +1.2
1,185,941 - DVU1081 0.82 -0.4
1,186,018 + DVU1081 0.87 +1.9
1,186,085 - +1.4
1,186,487 + DVU1082 0.23 +0.3
1,186,621 - DVU1082 0.45 -0.3
1,186,835 + DVU1082 0.80 -0.9
1,186,843 - DVU1082 0.82 -0.5
1,186,858 - DVU1082 0.84 +0.0
1,187,052 + +0.0
1,187,064 + -0.9
1,187,118 + +0.7

Or see this region's nucleotide sequence