Experiment: D-Trehalose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_965 and HP15_966 are separated by 66 nucleotides HP15_966 and HP15_967 are separated by 448 nucleotides HP15_967 and HP15_968 are separated by 116 nucleotides
HP15_965: HP15_965 - hypothetical protein, at 979,489 to 979,923
_965
HP15_966: HP15_966 - ABC transporter related protein, at 979,990 to 980,289
_966
HP15_967: HP15_967 - hypothetical protein, at 980,738 to 981,184
_967
HP15_968: HP15_968 - hypothetical protein, at 981,301 to 981,921
_968
Position (kb) 980
981
982 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 979.808 kb on + strand, within HP15_965 at 979.821 kb on - strand, within HP15_965 at 979.935 kb on - strand at 980.176 kb on - strand, within HP15_966 at 980.177 kb on + strand, within HP15_966 at 980.185 kb on - strand, within HP15_966 at 980.371 kb on + strand at 980.371 kb on + strand at 980.421 kb on - strand at 980.421 kb on - strand at 980.458 kb on + strand at 980.491 kb on + strand at 980.585 kb on + strand at 980.590 kb on - strand at 980.614 kb on - strand at 980.824 kb on + strand, within HP15_967 at 980.855 kb on + strand, within HP15_967 at 980.869 kb on + strand, within HP15_967 at 980.869 kb on + strand, within HP15_967 at 980.869 kb on + strand, within HP15_967 at 980.869 kb on + strand, within HP15_967 at 980.869 kb on + strand, within HP15_967 at 980.877 kb on - strand, within HP15_967 at 980.877 kb on - strand, within HP15_967 at 980.877 kb on - strand, within HP15_967 at 980.877 kb on - strand, within HP15_967 at 980.894 kb on - strand, within HP15_967 at 980.902 kb on + strand, within HP15_967 at 980.906 kb on + strand, within HP15_967 at 980.914 kb on - strand, within HP15_967 at 980.968 kb on + strand, within HP15_967 at 980.968 kb on + strand, within HP15_967 at 980.968 kb on + strand, within HP15_967 at 980.976 kb on - strand, within HP15_967 at 980.976 kb on - strand, within HP15_967 at 980.991 kb on - strand, within HP15_967 at 980.991 kb on - strand, within HP15_967 at 980.991 kb on - strand, within HP15_967 at 981.001 kb on - strand, within HP15_967 at 981.225 kb on - strand at 981.225 kb on - strand at 981.225 kb on - strand at 981.225 kb on - strand at 981.273 kb on + strand at 981.281 kb on - strand at 981.281 kb on - strand at 981.299 kb on - strand at 981.389 kb on + strand, within HP15_968 at 981.528 kb on + strand, within HP15_968 at 981.640 kb on + strand, within HP15_968 at 981.811 kb on + strand, within HP15_968 at 981.853 kb on - strand, within HP15_968 at 981.873 kb on + strand at 981.950 kb on - strand at 981.952 kb on + strand at 981.963 kb on - strand at 981.965 kb on + strand at 981.973 kb on - strand at 981.973 kb on - strand at 981.973 kb on - strand at 982.135 kb on - strand at 982.164 kb on + strand at 982.172 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose remove 979,808 + HP15_965 0.73 +1.3 979,821 - HP15_965 0.76 -0.1 979,935 - +2.8 980,176 - HP15_966 0.62 -0.8 980,177 + HP15_966 0.62 +0.0 980,185 - HP15_966 0.65 -0.9 980,371 + -0.5 980,371 + -0.3 980,421 - -0.4 980,421 - +1.9 980,458 + +1.0 980,491 + -0.3 980,585 + -2.2 980,590 - +1.4 980,614 - -0.1 980,824 + HP15_967 0.19 -1.5 980,855 + HP15_967 0.26 -0.2 980,869 + HP15_967 0.29 -0.9 980,869 + HP15_967 0.29 -0.6 980,869 + HP15_967 0.29 -0.1 980,869 + HP15_967 0.29 +0.9 980,869 + HP15_967 0.29 -0.6 980,877 - HP15_967 0.31 +1.6 980,877 - HP15_967 0.31 +0.4 980,877 - HP15_967 0.31 -0.2 980,877 - HP15_967 0.31 -0.4 980,894 - HP15_967 0.35 +1.5 980,902 + HP15_967 0.37 -0.3 980,906 + HP15_967 0.38 -0.2 980,914 - HP15_967 0.39 -0.1 980,968 + HP15_967 0.51 -0.4 980,968 + HP15_967 0.51 +0.4 980,968 + HP15_967 0.51 +0.1 980,976 - HP15_967 0.53 +2.1 980,976 - HP15_967 0.53 -0.5 980,991 - HP15_967 0.57 +0.2 980,991 - HP15_967 0.57 -1.0 980,991 - HP15_967 0.57 +0.8 981,001 - HP15_967 0.59 +0.6 981,225 - +0.1 981,225 - +0.1 981,225 - +1.1 981,225 - -0.2 981,273 + -0.5 981,281 - +1.2 981,281 - -0.8 981,299 - -1.0 981,389 + HP15_968 0.14 +1.2 981,528 + HP15_968 0.37 -0.2 981,640 + HP15_968 0.55 +0.2 981,811 + HP15_968 0.82 -0.5 981,853 - HP15_968 0.89 -0.8 981,873 + +0.3 981,950 - -0.4 981,952 + +0.7 981,963 - +0.8 981,965 + -0.0 981,973 - -0.4 981,973 - -1.0 981,973 - -0.6 982,135 - -0.2 982,164 + -0.6 982,172 - -0.9
Or see this region's nucleotide sequence