Experiment: D-Trehalose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_95 and HP15_96 are separated by 217 nucleotides HP15_96 and HP15_97 are separated by 4 nucleotides HP15_97 and HP15_98 are separated by 270 nucleotides
HP15_95: HP15_95 - cation diffusion facilitator family transporter, at 98,137 to 98,925
_95
HP15_96: HP15_96 - lipoprotein signal peptidase, at 99,143 to 99,658
_96
HP15_97: HP15_97 - cation efflux system protein, at 99,663 to 100,559
_97
HP15_98: HP15_98 - secreted protein with internal repeats-like protein, at 100,830 to 101,192
_98
Position (kb) 99
100
101 Strain fitness (log2 ratio) -2
-1
0
1
2 at 98.666 kb on - strand, within HP15_95 at 98.812 kb on + strand, within HP15_95 at 98.820 kb on - strand, within HP15_95 at 98.820 kb on - strand, within HP15_95 at 98.826 kb on - strand, within HP15_95 at 98.852 kb on - strand at 98.904 kb on - strand at 98.962 kb on + strand at 98.970 kb on - strand at 98.970 kb on - strand at 98.999 kb on + strand at 98.999 kb on + strand at 99.007 kb on - strand at 99.007 kb on - strand at 99.098 kb on + strand at 99.113 kb on + strand at 99.178 kb on - strand at 99.180 kb on - strand at 99.248 kb on + strand, within HP15_96 at 99.254 kb on - strand, within HP15_96 at 99.255 kb on - strand, within HP15_96 at 99.365 kb on - strand, within HP15_96 at 99.368 kb on + strand, within HP15_96 at 99.399 kb on + strand, within HP15_96 at 99.404 kb on + strand, within HP15_96 at 99.422 kb on - strand, within HP15_96 at 99.422 kb on - strand, within HP15_96 at 99.521 kb on + strand, within HP15_96 at 99.552 kb on + strand, within HP15_96 at 99.560 kb on - strand, within HP15_96 at 99.687 kb on - strand at 99.699 kb on + strand at 99.701 kb on + strand at 99.701 kb on + strand at 99.709 kb on - strand at 99.752 kb on - strand at 99.793 kb on - strand, within HP15_97 at 99.793 kb on - strand, within HP15_97 at 99.836 kb on + strand, within HP15_97 at 99.885 kb on - strand, within HP15_97 at 99.972 kb on + strand, within HP15_97 at 100.029 kb on - strand, within HP15_97 at 100.034 kb on - strand, within HP15_97 at 100.069 kb on - strand, within HP15_97 at 100.069 kb on - strand, within HP15_97 at 100.084 kb on - strand, within HP15_97 at 100.139 kb on - strand, within HP15_97 at 100.219 kb on + strand, within HP15_97 at 100.270 kb on - strand, within HP15_97 at 100.289 kb on + strand, within HP15_97 at 100.289 kb on + strand, within HP15_97 at 100.289 kb on + strand, within HP15_97 at 100.289 kb on + strand, within HP15_97 at 100.289 kb on + strand, within HP15_97 at 100.289 kb on + strand, within HP15_97 at 100.289 kb on + strand, within HP15_97 at 100.297 kb on + strand, within HP15_97 at 100.297 kb on + strand, within HP15_97 at 100.331 kb on - strand, within HP15_97 at 100.464 kb on + strand, within HP15_97 at 100.513 kb on + strand at 100.530 kb on + strand at 100.536 kb on - strand at 100.538 kb on - strand at 100.637 kb on - strand at 100.653 kb on + strand at 100.653 kb on + strand at 100.749 kb on - strand at 100.798 kb on + strand at 100.863 kb on + strand at 100.863 kb on + strand at 100.873 kb on + strand, within HP15_98 at 100.873 kb on + strand, within HP15_98 at 100.906 kb on - strand, within HP15_98 at 100.997 kb on + strand, within HP15_98 at 101.007 kb on + strand, within HP15_98 at 101.007 kb on + strand, within HP15_98 at 101.130 kb on + strand, within HP15_98 at 101.199 kb on - strand at 101.259 kb on - strand at 101.281 kb on - strand at 101.352 kb on - strand at 101.364 kb on + strand at 101.481 kb on - strand at 101.504 kb on + strand at 101.517 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose remove 98,666 - HP15_95 0.67 +1.5 98,812 + HP15_95 0.86 +2.4 98,820 - HP15_95 0.87 +1.5 98,820 - HP15_95 0.87 +2.1 98,826 - HP15_95 0.87 +1.2 98,852 - +1.6 98,904 - +0.5 98,962 + -0.3 98,970 - +1.1 98,970 - -0.4 98,999 + +1.2 98,999 + +1.4 99,007 - +0.5 99,007 - +0.4 99,098 + +0.4 99,113 + -0.7 99,178 - -0.1 99,180 - +0.1 99,248 + HP15_96 0.20 -0.3 99,254 - HP15_96 0.22 +1.3 99,255 - HP15_96 0.22 -0.6 99,365 - HP15_96 0.43 +0.3 99,368 + HP15_96 0.44 +1.5 99,399 + HP15_96 0.50 +0.8 99,404 + HP15_96 0.51 +1.2 99,422 - HP15_96 0.54 -0.9 99,422 - HP15_96 0.54 +1.8 99,521 + HP15_96 0.73 +1.3 99,552 + HP15_96 0.79 +1.7 99,560 - HP15_96 0.81 -0.0 99,687 - -0.6 99,699 + -0.7 99,701 + +1.0 99,701 + -0.5 99,709 - +1.5 99,752 - +1.5 99,793 - HP15_97 0.14 +1.0 99,793 - HP15_97 0.14 +0.1 99,836 + HP15_97 0.19 +0.1 99,885 - HP15_97 0.25 +0.7 99,972 + HP15_97 0.34 +0.0 100,029 - HP15_97 0.41 +1.0 100,034 - HP15_97 0.41 +1.5 100,069 - HP15_97 0.45 -0.5 100,069 - HP15_97 0.45 +1.1 100,084 - HP15_97 0.47 -1.5 100,139 - HP15_97 0.53 +0.4 100,219 + HP15_97 0.62 +0.1 100,270 - HP15_97 0.68 +1.3 100,289 + HP15_97 0.70 -0.3 100,289 + HP15_97 0.70 +1.7 100,289 + HP15_97 0.70 -0.9 100,289 + HP15_97 0.70 -0.5 100,289 + HP15_97 0.70 -1.9 100,289 + HP15_97 0.70 +0.5 100,289 + HP15_97 0.70 +0.6 100,297 + HP15_97 0.71 -0.6 100,297 + HP15_97 0.71 -0.5 100,331 - HP15_97 0.74 +2.1 100,464 + HP15_97 0.89 -0.1 100,513 + +1.3 100,530 + -0.3 100,536 - -0.8 100,538 - -1.9 100,637 - +0.2 100,653 + +0.1 100,653 + -1.2 100,749 - +1.1 100,798 + -1.3 100,863 + +0.0 100,863 + +0.2 100,873 + HP15_98 0.12 -0.5 100,873 + HP15_98 0.12 -0.8 100,906 - HP15_98 0.21 +0.2 100,997 + HP15_98 0.46 +0.1 101,007 + HP15_98 0.49 +0.9 101,007 + HP15_98 0.49 -0.2 101,130 + HP15_98 0.83 -0.5 101,199 - -0.1 101,259 - +1.2 101,281 - +0.1 101,352 - -0.9 101,364 + +1.4 101,481 - -1.1 101,504 + +0.1 101,517 - -0.1
Or see this region's nucleotide sequence