Experiment: D-Trehalose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_797 and HP15_798 are separated by 31 nucleotides HP15_798 and HP15_799 are separated by 133 nucleotides HP15_799 and HP15_800 overlap by 1 nucleotides HP15_800 and HP15_802 are separated by 6 nucleotides
HP15_797: HP15_797 - adenylate kinase, at 812,659 to 813,312
_797
HP15_798: HP15_798 - peptidase M22, glycoprotease, at 813,344 to 814,039
_798
HP15_799: HP15_799 - undecaprenyl pyrophosphate phosphatase-like protein, at 814,173 to 814,535
_799
HP15_800: HP15_800 - protein YhiQ, at 814,535 to 815,374
_800
HP15_802: HP15_802 - glycerol-3-phosphate acyltransferase, at 815,381 to 817,849
_802
Position (kb) 814
815 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 814.039 kb on - strand at 814.108 kb on - strand at 814.232 kb on + strand, within HP15_799 at 814.430 kb on - strand, within HP15_799 at 814.570 kb on + strand at 814.623 kb on - strand, within HP15_800 at 814.714 kb on - strand, within HP15_800 at 814.739 kb on - strand, within HP15_800 at 814.888 kb on - strand, within HP15_800 at 814.919 kb on + strand, within HP15_800 at 814.947 kb on + strand, within HP15_800 at 814.947 kb on + strand, within HP15_800 at 814.955 kb on - strand, within HP15_800 at 814.991 kb on + strand, within HP15_800 at 815.020 kb on - strand, within HP15_800 at 815.062 kb on + strand, within HP15_800 at 815.342 kb on + strand at 815.429 kb on + strand at 815.435 kb on - strand at 815.473 kb on + strand at 815.481 kb on - strand at 815.491 kb on - strand at 815.491 kb on - strand at 815.522 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose remove 814,039 - -0.4 814,108 - -0.4 814,232 + HP15_799 0.16 +1.3 814,430 - HP15_799 0.71 +3.5 814,570 + +1.4 814,623 - HP15_800 0.10 -2.7 814,714 - HP15_800 0.21 +0.9 814,739 - HP15_800 0.24 +1.2 814,888 - HP15_800 0.42 +2.5 814,919 + HP15_800 0.46 +0.9 814,947 + HP15_800 0.49 +2.1 814,947 + HP15_800 0.49 -0.3 814,955 - HP15_800 0.50 -1.1 814,991 + HP15_800 0.54 +2.2 815,020 - HP15_800 0.58 -0.5 815,062 + HP15_800 0.63 +1.3 815,342 + -0.2 815,429 + -1.7 815,435 - +0.7 815,473 + -2.4 815,481 - -0.1 815,491 - -0.5 815,491 - +1.5 815,522 - -2.1
Or see this region's nucleotide sequence