Strain Fitness in Marinobacter adhaerens HP15 around HP15_73

Experiment: D-Trehalose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_72 and HP15_73 are separated by 846 nucleotidesHP15_73 and HP15_74 are separated by 278 nucleotidesHP15_74 and HP15_75 overlap by 4 nucleotides HP15_72: HP15_72 - conserved hypothetical protein, at 79,782 to 80,045 _72 HP15_73: HP15_73 - hypothetical protein, at 80,892 to 81,146 _73 HP15_74: HP15_74 - hypothetical protein, at 81,425 to 81,820 _74 HP15_75: HP15_75 - conserved hypothetical protein, at 81,817 to 84,126 _75 Position (kb) 80 81 82Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 79.954 kb on - strand, within HP15_72at 80.050 kb on + strandat 80.050 kb on + strandat 80.050 kb on + strandat 80.053 kb on + strandat 80.053 kb on + strandat 80.110 kb on + strandat 80.111 kb on + strandat 80.130 kb on + strandat 80.138 kb on - strandat 80.267 kb on + strandat 80.309 kb on + strandat 80.347 kb on + strandat 80.419 kb on + strandat 80.419 kb on + strandat 80.427 kb on - strandat 80.444 kb on + strandat 80.444 kb on + strandat 80.713 kb on + strandat 80.713 kb on + strandat 80.721 kb on + strandat 80.721 kb on - strandat 80.721 kb on - strandat 80.771 kb on - strandat 80.781 kb on - strandat 80.786 kb on - strandat 80.815 kb on + strandat 80.912 kb on - strandat 80.921 kb on - strand, within HP15_73at 80.921 kb on - strand, within HP15_73at 80.935 kb on + strand, within HP15_73at 80.945 kb on + strand, within HP15_73at 80.965 kb on + strand, within HP15_73at 80.973 kb on - strand, within HP15_73at 80.973 kb on - strand, within HP15_73at 81.050 kb on + strand, within HP15_73at 81.135 kb on + strandat 81.143 kb on - strandat 81.195 kb on + strandat 81.202 kb on - strandat 81.292 kb on + strandat 81.293 kb on - strandat 81.345 kb on + strandat 81.423 kb on + strandat 81.463 kb on + strandat 81.463 kb on + strandat 81.470 kb on + strand, within HP15_74at 81.497 kb on - strand, within HP15_74at 81.507 kb on - strand, within HP15_74at 81.513 kb on + strand, within HP15_74at 81.534 kb on + strand, within HP15_74at 81.559 kb on - strand, within HP15_74at 81.559 kb on - strand, within HP15_74at 81.579 kb on + strand, within HP15_74at 81.611 kb on - strand, within HP15_74at 81.759 kb on - strand, within HP15_74at 81.777 kb on - strand, within HP15_74at 81.851 kb on - strandat 81.864 kb on + strandat 81.951 kb on - strandat 81.959 kb on - strandat 82.024 kb on + strandat 82.113 kb on + strand, within HP15_75

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose
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79,954 - HP15_72 0.65 +0.7
80,050 + +0.9
80,050 + -0.9
80,050 + +0.0
80,053 + -0.5
80,053 + -0.2
80,110 + -0.7
80,111 + -0.4
80,130 + +1.1
80,138 - +1.6
80,267 + -0.6
80,309 + +2.1
80,347 + +0.3
80,419 + -0.1
80,419 + -1.2
80,427 - -0.4
80,444 + +2.2
80,444 + +0.7
80,713 + -0.9
80,713 + -0.5
80,721 + +0.8
80,721 - -0.2
80,721 - -0.5
80,771 - +0.9
80,781 - -0.2
80,786 - +0.7
80,815 + -1.9
80,912 - +0.2
80,921 - HP15_73 0.11 +0.3
80,921 - HP15_73 0.11 +1.5
80,935 + HP15_73 0.17 +1.1
80,945 + HP15_73 0.21 +1.1
80,965 + HP15_73 0.29 +0.0
80,973 - HP15_73 0.32 -0.1
80,973 - HP15_73 0.32 +1.8
81,050 + HP15_73 0.62 +0.7
81,135 + +2.1
81,143 - +0.2
81,195 + -0.6
81,202 - -0.2
81,292 + -0.9
81,293 - +0.5
81,345 + +0.9
81,423 + +0.8
81,463 + -0.8
81,463 + -0.6
81,470 + HP15_74 0.11 +0.1
81,497 - HP15_74 0.18 +1.4
81,507 - HP15_74 0.21 +1.0
81,513 + HP15_74 0.22 +2.2
81,534 + HP15_74 0.28 -0.3
81,559 - HP15_74 0.34 +1.6
81,559 - HP15_74 0.34 -0.5
81,579 + HP15_74 0.39 +1.4
81,611 - HP15_74 0.47 +1.1
81,759 - HP15_74 0.84 -0.4
81,777 - HP15_74 0.89 +1.3
81,851 - -0.3
81,864 + +1.2
81,951 - -0.9
81,959 - -0.7
82,024 + -0.2
82,113 + HP15_75 0.13 -3.2

Or see this region's nucleotide sequence