Experiment: D-Trehalose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_541 and HP15_542 are separated by 21 nucleotides HP15_542 and HP15_543 are separated by 193 nucleotides HP15_543 and HP15_544 are separated by 12 nucleotides
HP15_541: HP15_541 - peptide chain release factor 3, at 562,901 to 564,526
_541
HP15_542: HP15_542 - TatD-related deoxyribonuclease, at 564,548 to 565,333
_542
HP15_543: HP15_543 - 50S ribosomal protein L13, at 565,527 to 565,955
_543
HP15_544: HP15_544 - ribosomal protein S9, at 565,968 to 566,360
_544
Position (kb) 564
565
566 Strain fitness (log2 ratio) -1
0
1
2 at 563.635 kb on + strand, within HP15_541 at 563.643 kb on - strand, within HP15_541 at 563.643 kb on - strand, within HP15_541 at 563.643 kb on - strand, within HP15_541 at 563.885 kb on - strand, within HP15_541 at 564.070 kb on - strand, within HP15_541 at 564.311 kb on + strand, within HP15_541 at 564.362 kb on - strand, within HP15_541 at 564.457 kb on - strand at 564.646 kb on - strand, within HP15_542 at 564.674 kb on + strand, within HP15_542 at 564.674 kb on + strand, within HP15_542 at 564.718 kb on + strand, within HP15_542 at 564.739 kb on + strand, within HP15_542 at 564.936 kb on - strand, within HP15_542 at 565.152 kb on - strand, within HP15_542 at 565.251 kb on - strand, within HP15_542
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose remove 563,635 + HP15_541 0.45 -0.7 563,643 - HP15_541 0.46 +1.3 563,643 - HP15_541 0.46 -0.0 563,643 - HP15_541 0.46 +1.5 563,885 - HP15_541 0.61 +0.4 564,070 - HP15_541 0.72 +0.7 564,311 + HP15_541 0.87 +2.0 564,362 - HP15_541 0.90 -0.7 564,457 - +0.6 564,646 - HP15_542 0.12 +1.6 564,674 + HP15_542 0.16 -0.4 564,674 + HP15_542 0.16 +0.9 564,718 + HP15_542 0.22 +1.3 564,739 + HP15_542 0.24 +1.8 564,936 - HP15_542 0.49 +1.7 565,152 - HP15_542 0.77 +0.4 565,251 - HP15_542 0.89 +0.5
Or see this region's nucleotide sequence