Experiment: D-Trehalose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_429 and HP15_430 are separated by 112 nucleotides HP15_430 and HP15_431 are separated by 92 nucleotides
HP15_429: HP15_429 - GTP-binding protein TypA, at 428,169 to 429,980
_429
HP15_430: HP15_430 - peptidase S33, proline iminopeptidase 1, at 430,093 to 431,055
_430
HP15_431: HP15_431 - D-tyrosyl-tRNA(Tyr) deacylase, at 431,148 to 431,606
_431
Position (kb) 430
431
432 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 429.193 kb on + strand, within HP15_429 at 429.193 kb on + strand, within HP15_429 at 429.201 kb on - strand, within HP15_429 at 429.240 kb on - strand, within HP15_429 at 429.406 kb on - strand, within HP15_429 at 429.449 kb on - strand, within HP15_429 at 429.667 kb on - strand, within HP15_429 at 429.686 kb on - strand, within HP15_429 at 429.835 kb on + strand at 429.838 kb on - strand at 429.871 kb on + strand at 429.917 kb on - strand at 429.918 kb on - strand at 429.988 kb on + strand at 430.209 kb on + strand, within HP15_430 at 430.291 kb on + strand, within HP15_430 at 430.311 kb on + strand, within HP15_430 at 430.311 kb on + strand, within HP15_430 at 430.319 kb on - strand, within HP15_430 at 430.329 kb on + strand, within HP15_430 at 430.364 kb on - strand, within HP15_430 at 430.377 kb on - strand, within HP15_430 at 430.458 kb on - strand, within HP15_430 at 430.604 kb on + strand, within HP15_430 at 430.670 kb on - strand, within HP15_430 at 430.700 kb on + strand, within HP15_430 at 430.765 kb on + strand, within HP15_430 at 430.824 kb on + strand, within HP15_430 at 430.827 kb on - strand, within HP15_430 at 430.893 kb on - strand, within HP15_430 at 430.903 kb on + strand, within HP15_430 at 430.926 kb on + strand, within HP15_430 at 430.926 kb on + strand, within HP15_430 at 430.930 kb on - strand, within HP15_430 at 430.932 kb on + strand, within HP15_430 at 430.952 kb on - strand, within HP15_430 at 431.108 kb on + strand at 431.108 kb on + strand at 431.124 kb on + strand at 431.234 kb on - strand, within HP15_431 at 431.406 kb on + strand, within HP15_431 at 431.414 kb on - strand, within HP15_431 at 431.489 kb on + strand, within HP15_431 at 431.507 kb on - strand, within HP15_431 at 431.537 kb on + strand, within HP15_431 at 431.543 kb on + strand, within HP15_431 at 431.550 kb on - strand, within HP15_431 at 431.565 kb on + strand at 431.659 kb on + strand at 431.659 kb on + strand at 431.728 kb on - strand at 431.775 kb on - strand at 431.783 kb on - strand at 431.914 kb on - strand at 432.002 kb on - strand at 432.005 kb on + strand at 432.009 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose remove 429,193 + HP15_429 0.57 -0.5 429,193 + HP15_429 0.57 -1.6 429,201 - HP15_429 0.57 -0.8 429,240 - HP15_429 0.59 -0.5 429,406 - HP15_429 0.68 -0.4 429,449 - HP15_429 0.71 -0.2 429,667 - HP15_429 0.83 +0.4 429,686 - HP15_429 0.84 +1.0 429,835 + -0.4 429,838 - +0.1 429,871 + +1.0 429,917 - +2.0 429,918 - +0.1 429,988 + +0.0 430,209 + HP15_430 0.12 +1.5 430,291 + HP15_430 0.21 +2.2 430,311 + HP15_430 0.23 -0.3 430,311 + HP15_430 0.23 -0.4 430,319 - HP15_430 0.23 +4.2 430,329 + HP15_430 0.25 +1.5 430,364 - HP15_430 0.28 +1.3 430,377 - HP15_430 0.29 -0.8 430,458 - HP15_430 0.38 +1.8 430,604 + HP15_430 0.53 -0.5 430,670 - HP15_430 0.60 -1.4 430,700 + HP15_430 0.63 -1.3 430,765 + HP15_430 0.70 -1.1 430,824 + HP15_430 0.76 +0.6 430,827 - HP15_430 0.76 +1.4 430,893 - HP15_430 0.83 +1.3 430,903 + HP15_430 0.84 +0.9 430,926 + HP15_430 0.87 -0.4 430,926 + HP15_430 0.87 +1.4 430,930 - HP15_430 0.87 -0.5 430,932 + HP15_430 0.87 +0.8 430,952 - HP15_430 0.89 +0.6 431,108 + -0.6 431,108 + +1.5 431,124 + -0.6 431,234 - HP15_431 0.19 -0.3 431,406 + HP15_431 0.56 +1.3 431,414 - HP15_431 0.58 -1.1 431,489 + HP15_431 0.74 -0.3 431,507 - HP15_431 0.78 +0.0 431,537 + HP15_431 0.85 +0.8 431,543 + HP15_431 0.86 +0.4 431,550 - HP15_431 0.88 +1.7 431,565 + -0.2 431,659 + +1.5 431,659 + -0.4 431,728 - +0.2 431,775 - +0.1 431,783 - +0.6 431,914 - +1.4 432,002 - +0.0 432,005 + -0.2 432,009 + +0.2
Or see this region's nucleotide sequence