Strain Fitness in Marinobacter adhaerens HP15 around HP15_3935

Experiment: D-Trehalose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3934 and HP15_3935 are separated by 21 nucleotidesHP15_3935 and HP15_3936 are separated by 74 nucleotides HP15_3934: HP15_3934 - acetyl-CoA carboxylase biotin carboxylase subunit, at 4,161,682 to 4,163,103 _3934 HP15_3935: HP15_3935 - pyruvate carboxylase subunit B, at 4,163,125 to 4,164,924 _3935 HP15_3936: HP15_3936 - acyl-CoA dehydrogenase domain protein, at 4,164,999 to 4,166,168 _3936 Position (kb) 4163 4164 4165Strain fitness (log2 ratio) -2 -1 0 1 2at 4162.246 kb on + strand, within HP15_3934at 4162.252 kb on + strand, within HP15_3934at 4162.292 kb on - strand, within HP15_3934at 4162.455 kb on + strand, within HP15_3934at 4162.557 kb on + strand, within HP15_3934at 4162.714 kb on + strand, within HP15_3934at 4162.769 kb on + strand, within HP15_3934at 4162.777 kb on - strand, within HP15_3934at 4162.794 kb on + strand, within HP15_3934at 4162.986 kb on + strandat 4163.178 kb on + strandat 4163.243 kb on - strandat 4163.244 kb on - strandat 4163.262 kb on - strandat 4163.289 kb on - strandat 4163.389 kb on - strand, within HP15_3935at 4163.559 kb on + strand, within HP15_3935at 4163.567 kb on - strand, within HP15_3935at 4163.615 kb on - strand, within HP15_3935at 4163.615 kb on - strand, within HP15_3935at 4163.615 kb on - strand, within HP15_3935at 4163.652 kb on + strand, within HP15_3935at 4163.670 kb on - strand, within HP15_3935at 4163.675 kb on - strand, within HP15_3935at 4163.684 kb on + strand, within HP15_3935at 4163.692 kb on - strand, within HP15_3935at 4163.714 kb on + strand, within HP15_3935at 4163.771 kb on - strand, within HP15_3935at 4163.890 kb on - strand, within HP15_3935at 4163.906 kb on + strand, within HP15_3935at 4163.914 kb on - strand, within HP15_3935at 4163.919 kb on + strand, within HP15_3935at 4163.995 kb on - strand, within HP15_3935at 4163.997 kb on - strand, within HP15_3935at 4164.016 kb on - strand, within HP15_3935at 4164.032 kb on + strand, within HP15_3935at 4164.041 kb on - strand, within HP15_3935at 4164.326 kb on + strand, within HP15_3935at 4164.334 kb on - strand, within HP15_3935at 4164.389 kb on - strand, within HP15_3935at 4164.413 kb on - strand, within HP15_3935at 4164.642 kb on + strand, within HP15_3935at 4164.684 kb on - strand, within HP15_3935at 4164.689 kb on - strand, within HP15_3935at 4164.759 kb on + strandat 4164.778 kb on + strandat 4164.786 kb on - strandat 4164.887 kb on - strandat 4164.892 kb on - strandat 4165.064 kb on + strandat 4165.175 kb on - strand, within HP15_3936at 4165.231 kb on + strand, within HP15_3936at 4165.358 kb on + strand, within HP15_3936at 4165.366 kb on - strand, within HP15_3936at 4165.366 kb on - strand, within HP15_3936at 4165.396 kb on + strand, within HP15_3936at 4165.468 kb on + strand, within HP15_3936at 4165.622 kb on - strand, within HP15_3936at 4165.763 kb on + strand, within HP15_3936at 4165.771 kb on - strand, within HP15_3936at 4165.771 kb on - strand, within HP15_3936at 4165.911 kb on - strand, within HP15_3936

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose
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4,162,246 + HP15_3934 0.40 +1.3
4,162,252 + HP15_3934 0.40 -0.9
4,162,292 - HP15_3934 0.43 -0.5
4,162,455 + HP15_3934 0.54 -0.9
4,162,557 + HP15_3934 0.62 +0.5
4,162,714 + HP15_3934 0.73 -0.5
4,162,769 + HP15_3934 0.76 -0.7
4,162,777 - HP15_3934 0.77 -0.5
4,162,794 + HP15_3934 0.78 +1.0
4,162,986 + -1.2
4,163,178 + -0.5
4,163,243 - -0.3
4,163,244 - +1.2
4,163,262 - -1.0
4,163,289 - +1.4
4,163,389 - HP15_3935 0.15 +1.0
4,163,559 + HP15_3935 0.24 -0.8
4,163,567 - HP15_3935 0.25 -0.0
4,163,615 - HP15_3935 0.27 -0.4
4,163,615 - HP15_3935 0.27 -0.7
4,163,615 - HP15_3935 0.27 -0.5
4,163,652 + HP15_3935 0.29 +1.4
4,163,670 - HP15_3935 0.30 -1.3
4,163,675 - HP15_3935 0.31 -1.1
4,163,684 + HP15_3935 0.31 +0.3
4,163,692 - HP15_3935 0.32 +1.5
4,163,714 + HP15_3935 0.33 -0.8
4,163,771 - HP15_3935 0.36 +0.9
4,163,890 - HP15_3935 0.42 +1.1
4,163,906 + HP15_3935 0.43 +0.4
4,163,914 - HP15_3935 0.44 -1.0
4,163,919 + HP15_3935 0.44 -1.1
4,163,995 - HP15_3935 0.48 -2.0
4,163,997 - HP15_3935 0.48 +1.1
4,164,016 - HP15_3935 0.49 -0.6
4,164,032 + HP15_3935 0.50 -0.7
4,164,041 - HP15_3935 0.51 -0.1
4,164,326 + HP15_3935 0.67 -0.2
4,164,334 - HP15_3935 0.67 +1.4
4,164,389 - HP15_3935 0.70 -0.9
4,164,413 - HP15_3935 0.72 +1.5
4,164,642 + HP15_3935 0.84 -0.1
4,164,684 - HP15_3935 0.87 +0.5
4,164,689 - HP15_3935 0.87 +0.5
4,164,759 + -0.3
4,164,778 + +0.3
4,164,786 - +0.3
4,164,887 - -0.9
4,164,892 - +0.1
4,165,064 + +1.9
4,165,175 - HP15_3936 0.15 -0.4
4,165,231 + HP15_3936 0.20 +0.9
4,165,358 + HP15_3936 0.31 +0.3
4,165,366 - HP15_3936 0.31 -0.9
4,165,366 - HP15_3936 0.31 +0.3
4,165,396 + HP15_3936 0.34 +1.6
4,165,468 + HP15_3936 0.40 +1.8
4,165,622 - HP15_3936 0.53 -0.9
4,165,763 + HP15_3936 0.65 -1.7
4,165,771 - HP15_3936 0.66 +1.4
4,165,771 - HP15_3936 0.66 -0.5
4,165,911 - HP15_3936 0.78 -0.1

Or see this region's nucleotide sequence