Experiment: D-Trehalose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3929 and HP15_3930 are separated by 39 nucleotides HP15_3930 and HP15_3931 are separated by 25 nucleotides HP15_3931 and HP15_3932 are separated by 72 nucleotides
HP15_3929: HP15_3929 - acyl-CoA dehydrogenase domain protein, at 4,158,649 to 4,159,845
_3929
HP15_3930: HP15_3930 - putative two component system response regulator, at 4,159,885 to 4,160,151
_3930
HP15_3931: HP15_3931 - hypothetical protein, at 4,160,177 to 4,160,458
_3931
HP15_3932: HP15_3932 - CBS domain containing protein, at 4,160,531 to 4,161,130
_3932
Position (kb) 4159
4160
4161 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4158.975 kb on - strand, within HP15_3929 at 4159.007 kb on - strand, within HP15_3929 at 4159.021 kb on - strand, within HP15_3929 at 4159.023 kb on + strand, within HP15_3929 at 4159.090 kb on + strand, within HP15_3929 at 4159.141 kb on + strand, within HP15_3929 at 4159.141 kb on + strand, within HP15_3929 at 4159.142 kb on + strand, within HP15_3929 at 4159.149 kb on - strand, within HP15_3929 at 4159.150 kb on - strand, within HP15_3929 at 4159.179 kb on - strand, within HP15_3929 at 4159.228 kb on + strand, within HP15_3929 at 4159.257 kb on + strand, within HP15_3929 at 4159.356 kb on + strand, within HP15_3929 at 4159.364 kb on - strand, within HP15_3929 at 4159.415 kb on + strand, within HP15_3929 at 4159.437 kb on + strand, within HP15_3929 at 4159.437 kb on + strand, within HP15_3929 at 4159.437 kb on + strand, within HP15_3929 at 4159.445 kb on - strand, within HP15_3929 at 4159.445 kb on - strand, within HP15_3929 at 4159.445 kb on - strand, within HP15_3929 at 4159.445 kb on - strand, within HP15_3929 at 4159.445 kb on - strand, within HP15_3929 at 4159.460 kb on + strand, within HP15_3929 at 4159.463 kb on - strand, within HP15_3929 at 4159.470 kb on + strand, within HP15_3929 at 4159.482 kb on - strand, within HP15_3929 at 4159.613 kb on + strand, within HP15_3929 at 4159.654 kb on + strand, within HP15_3929 at 4159.659 kb on - strand, within HP15_3929 at 4159.745 kb on + strand at 4159.745 kb on + strand at 4159.745 kb on + strand at 4159.745 kb on + strand at 4159.753 kb on - strand at 4159.753 kb on - strand at 4159.753 kb on - strand at 4159.793 kb on + strand at 4160.059 kb on - strand, within HP15_3930 at 4160.086 kb on - strand, within HP15_3930 at 4160.114 kb on + strand, within HP15_3930 at 4160.190 kb on + strand at 4160.193 kb on - strand at 4160.260 kb on + strand, within HP15_3931 at 4160.426 kb on + strand, within HP15_3931 at 4160.461 kb on - strand at 4160.590 kb on - strand at 4160.600 kb on + strand, within HP15_3932 at 4160.702 kb on + strand, within HP15_3932 at 4160.814 kb on + strand, within HP15_3932 at 4160.839 kb on + strand, within HP15_3932 at 4160.839 kb on + strand, within HP15_3932 at 4160.935 kb on + strand, within HP15_3932 at 4161.020 kb on + strand, within HP15_3932
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose remove 4,158,975 - HP15_3929 0.27 -1.3 4,159,007 - HP15_3929 0.30 +1.1 4,159,021 - HP15_3929 0.31 -0.9 4,159,023 + HP15_3929 0.31 +2.3 4,159,090 + HP15_3929 0.37 -0.5 4,159,141 + HP15_3929 0.41 -0.7 4,159,141 + HP15_3929 0.41 -1.3 4,159,142 + HP15_3929 0.41 -0.7 4,159,149 - HP15_3929 0.42 -1.5 4,159,150 - HP15_3929 0.42 +2.4 4,159,179 - HP15_3929 0.44 +1.0 4,159,228 + HP15_3929 0.48 -0.6 4,159,257 + HP15_3929 0.51 -0.0 4,159,356 + HP15_3929 0.59 +0.5 4,159,364 - HP15_3929 0.60 +0.6 4,159,415 + HP15_3929 0.64 -0.0 4,159,437 + HP15_3929 0.66 -0.9 4,159,437 + HP15_3929 0.66 -1.4 4,159,437 + HP15_3929 0.66 -0.2 4,159,445 - HP15_3929 0.66 -1.3 4,159,445 - HP15_3929 0.66 -0.3 4,159,445 - HP15_3929 0.66 -0.9 4,159,445 - HP15_3929 0.66 -1.4 4,159,445 - HP15_3929 0.66 -0.7 4,159,460 + HP15_3929 0.68 +1.7 4,159,463 - HP15_3929 0.68 +0.3 4,159,470 + HP15_3929 0.69 -0.5 4,159,482 - HP15_3929 0.70 -1.0 4,159,613 + HP15_3929 0.81 -1.5 4,159,654 + HP15_3929 0.84 -2.0 4,159,659 - HP15_3929 0.84 -0.4 4,159,745 + +1.2 4,159,745 + -1.3 4,159,745 + -1.3 4,159,745 + -0.3 4,159,753 - -0.7 4,159,753 - +0.6 4,159,753 - -0.6 4,159,793 + -0.0 4,160,059 - HP15_3930 0.65 -0.5 4,160,086 - HP15_3930 0.75 -0.9 4,160,114 + HP15_3930 0.86 +0.9 4,160,190 + -1.0 4,160,193 - +1.0 4,160,260 + HP15_3931 0.29 -0.6 4,160,426 + HP15_3931 0.88 -0.5 4,160,461 - -0.2 4,160,590 - -1.0 4,160,600 + HP15_3932 0.12 +0.1 4,160,702 + HP15_3932 0.28 -1.0 4,160,814 + HP15_3932 0.47 -0.0 4,160,839 + HP15_3932 0.51 +1.0 4,160,839 + HP15_3932 0.51 -0.8 4,160,935 + HP15_3932 0.67 -1.4 4,161,020 + HP15_3932 0.81 +0.2
Or see this region's nucleotide sequence