Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01450 and PGA1_262p01460 overlap by 1 nucleotides PGA1_262p01460 and PGA1_262p01470 are separated by 65 nucleotides PGA1_262p01470 and PGA1_262p01480 overlap by 4 nucleotides
PGA1_262p01450: PGA1_262p01450 - putative membrane dipeptidase, at 158,085 to 159,077
_262p01450
PGA1_262p01460: PGA1_262p01460 - aldehyde dehydrogenase, at 159,077 to 160,570
_262p01460
PGA1_262p01470: PGA1_262p01470 - transcriptional regulator, LysR family, at 160,636 to 161,532
_262p01470
PGA1_262p01480: PGA1_262p01480 - transcriptional regulator, AraC family, at 161,529 to 162,536
_262p01480
Position (kb) 159
160
161 Strain fitness (log2 ratio) -2
-1
0
1
2 at 158.088 kb on + strand at 158.215 kb on - strand, within PGA1_262p01450 at 158.345 kb on + strand, within PGA1_262p01450 at 158.525 kb on + strand, within PGA1_262p01450 at 158.533 kb on - strand, within PGA1_262p01450 at 158.533 kb on - strand, within PGA1_262p01450 at 158.555 kb on + strand, within PGA1_262p01450 at 158.607 kb on - strand, within PGA1_262p01450 at 158.786 kb on + strand, within PGA1_262p01450 at 158.786 kb on + strand, within PGA1_262p01450 at 158.895 kb on - strand, within PGA1_262p01450 at 158.945 kb on - strand, within PGA1_262p01450 at 159.095 kb on + strand at 159.117 kb on + strand at 159.143 kb on - strand at 159.154 kb on + strand at 159.154 kb on + strand at 159.156 kb on + strand at 159.546 kb on + strand, within PGA1_262p01460 at 159.566 kb on + strand, within PGA1_262p01460 at 159.604 kb on + strand, within PGA1_262p01460 at 159.871 kb on + strand, within PGA1_262p01460 at 159.871 kb on + strand, within PGA1_262p01460 at 159.871 kb on + strand, within PGA1_262p01460 at 159.927 kb on - strand, within PGA1_262p01460 at 159.936 kb on + strand, within PGA1_262p01460 at 159.989 kb on - strand, within PGA1_262p01460 at 160.235 kb on - strand, within PGA1_262p01460 at 160.241 kb on - strand, within PGA1_262p01460 at 160.269 kb on + strand, within PGA1_262p01460 at 160.277 kb on + strand, within PGA1_262p01460 at 160.277 kb on - strand, within PGA1_262p01460 at 160.407 kb on + strand, within PGA1_262p01460 at 160.415 kb on - strand, within PGA1_262p01460 at 160.521 kb on + strand at 160.534 kb on - strand at 160.569 kb on - strand at 160.929 kb on + strand, within PGA1_262p01470 at 160.949 kb on + strand, within PGA1_262p01470 at 161.027 kb on + strand, within PGA1_262p01470 at 161.091 kb on - strand, within PGA1_262p01470 at 161.129 kb on + strand, within PGA1_262p01470 at 161.129 kb on + strand, within PGA1_262p01470 at 161.251 kb on - strand, within PGA1_262p01470 at 161.268 kb on + strand, within PGA1_262p01470 at 161.276 kb on - strand, within PGA1_262p01470 at 161.276 kb on - strand, within PGA1_262p01470 at 161.300 kb on + strand, within PGA1_262p01470 at 161.457 kb on + strand at 161.457 kb on + strand at 161.457 kb on + strand at 161.457 kb on + strand at 161.457 kb on + strand at 161.534 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 158,088 + -0.6 158,215 - PGA1_262p01450 0.13 -2.6 158,345 + PGA1_262p01450 0.26 +0.8 158,525 + PGA1_262p01450 0.44 +0.2 158,533 - PGA1_262p01450 0.45 +1.3 158,533 - PGA1_262p01450 0.45 -0.8 158,555 + PGA1_262p01450 0.47 -0.2 158,607 - PGA1_262p01450 0.53 +1.6 158,786 + PGA1_262p01450 0.71 +0.4 158,786 + PGA1_262p01450 0.71 +0.2 158,895 - PGA1_262p01450 0.82 -0.7 158,945 - PGA1_262p01450 0.87 +0.0 159,095 + +0.4 159,117 + +1.6 159,143 - -0.4 159,154 + -1.1 159,154 + +2.0 159,156 + +0.8 159,546 + PGA1_262p01460 0.31 -0.8 159,566 + PGA1_262p01460 0.33 -1.8 159,604 + PGA1_262p01460 0.35 +0.0 159,871 + PGA1_262p01460 0.53 -0.4 159,871 + PGA1_262p01460 0.53 +0.2 159,871 + PGA1_262p01460 0.53 -0.8 159,927 - PGA1_262p01460 0.57 -2.0 159,936 + PGA1_262p01460 0.57 -0.3 159,989 - PGA1_262p01460 0.61 -1.2 160,235 - PGA1_262p01460 0.78 +0.6 160,241 - PGA1_262p01460 0.78 -1.0 160,269 + PGA1_262p01460 0.80 +0.0 160,277 + PGA1_262p01460 0.80 -0.4 160,277 - PGA1_262p01460 0.80 +1.6 160,407 + PGA1_262p01460 0.89 -1.2 160,415 - PGA1_262p01460 0.90 -2.1 160,521 + +1.7 160,534 - -0.7 160,569 - +0.0 160,929 + PGA1_262p01470 0.33 +0.3 160,949 + PGA1_262p01470 0.35 +0.3 161,027 + PGA1_262p01470 0.44 +0.9 161,091 - PGA1_262p01470 0.51 +0.7 161,129 + PGA1_262p01470 0.55 -0.6 161,129 + PGA1_262p01470 0.55 +1.0 161,251 - PGA1_262p01470 0.69 +1.0 161,268 + PGA1_262p01470 0.70 -2.3 161,276 - PGA1_262p01470 0.71 +0.2 161,276 - PGA1_262p01470 0.71 +0.2 161,300 + PGA1_262p01470 0.74 -1.0 161,457 + +0.8 161,457 + +0.0 161,457 + +0.1 161,457 + +0.3 161,457 + +0.0 161,534 - +0.6
Or see this region's nucleotide sequence