Strain Fitness in Marinobacter adhaerens HP15 around HP15_3645

Experiment: D-Trehalose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3644 and HP15_3645 are separated by 83 nucleotidesHP15_3645 and HP15_3646 are separated by 96 nucleotidesHP15_3646 and HP15_3647 are separated by 179 nucleotides HP15_3644: HP15_3644 - conserved hypothetical protein, secreted, at 3,837,940 to 3,838,212 _3644 HP15_3645: HP15_3645 - hypothetical protein, at 3,838,296 to 3,838,901 _3645 HP15_3646: HP15_3646 - hypothetical protein, at 3,838,998 to 3,839,264 _3646 HP15_3647: HP15_3647 - hypothetical protein, at 3,839,444 to 3,840,112 _3647 Position (kb) 3838 3839Strain fitness (log2 ratio) -1 0 1 2at 3837.403 kb on + strandat 3837.432 kb on - strandat 3837.581 kb on - strandat 3837.591 kb on - strandat 3837.608 kb on - strandat 3837.668 kb on - strandat 3837.719 kb on + strandat 3837.793 kb on + strandat 3837.832 kb on - strandat 3837.849 kb on + strandat 3837.897 kb on + strandat 3837.915 kb on + strandat 3837.985 kb on + strand, within HP15_3644at 3837.993 kb on - strand, within HP15_3644at 3837.993 kb on - strand, within HP15_3644at 3838.100 kb on + strand, within HP15_3644at 3838.214 kb on + strandat 3838.214 kb on + strandat 3838.222 kb on - strandat 3838.266 kb on - strandat 3838.295 kb on + strandat 3838.380 kb on + strandat 3838.535 kb on + strand, within HP15_3645at 3838.535 kb on + strand, within HP15_3645at 3838.540 kb on + strand, within HP15_3645at 3838.611 kb on + strand, within HP15_3645at 3838.626 kb on + strand, within HP15_3645at 3838.626 kb on - strand, within HP15_3645at 3838.648 kb on + strand, within HP15_3645at 3838.677 kb on - strand, within HP15_3645at 3838.723 kb on + strand, within HP15_3645at 3838.769 kb on - strand, within HP15_3645at 3838.802 kb on + strand, within HP15_3645at 3838.809 kb on + strand, within HP15_3645at 3838.814 kb on + strand, within HP15_3645at 3838.821 kb on - strand, within HP15_3645at 3838.821 kb on - strand, within HP15_3645at 3838.919 kb on + strandat 3838.951 kb on - strandat 3838.996 kb on + strandat 3838.996 kb on + strandat 3839.004 kb on - strandat 3839.029 kb on - strand, within HP15_3646at 3839.071 kb on - strand, within HP15_3646at 3839.216 kb on - strand, within HP15_3646at 3839.217 kb on - strand, within HP15_3646at 3839.403 kb on + strandat 3839.467 kb on + strandat 3839.496 kb on - strandat 3839.591 kb on + strand, within HP15_3647at 3839.599 kb on - strand, within HP15_3647at 3839.652 kb on + strand, within HP15_3647at 3839.709 kb on + strand, within HP15_3647at 3839.856 kb on - strand, within HP15_3647

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose
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3,837,403 + -0.4
3,837,432 - +1.4
3,837,581 - +1.3
3,837,591 - +0.7
3,837,608 - -0.8
3,837,668 - +1.7
3,837,719 + -0.3
3,837,793 + -1.7
3,837,832 - +0.1
3,837,849 + -0.3
3,837,897 + -0.8
3,837,915 + +1.9
3,837,985 + HP15_3644 0.16 -0.0
3,837,993 - HP15_3644 0.19 +0.2
3,837,993 - HP15_3644 0.19 -0.2
3,838,100 + HP15_3644 0.59 +1.1
3,838,214 + -0.4
3,838,214 + +0.3
3,838,222 - +0.0
3,838,266 - +1.0
3,838,295 + +0.7
3,838,380 + -1.2
3,838,535 + HP15_3645 0.39 +1.1
3,838,535 + HP15_3645 0.39 -1.2
3,838,540 + HP15_3645 0.40 -0.1
3,838,611 + HP15_3645 0.52 -0.1
3,838,626 + HP15_3645 0.54 -0.1
3,838,626 - HP15_3645 0.54 +0.3
3,838,648 + HP15_3645 0.58 -1.0
3,838,677 - HP15_3645 0.63 +0.9
3,838,723 + HP15_3645 0.70 -1.0
3,838,769 - HP15_3645 0.78 -0.9
3,838,802 + HP15_3645 0.83 -0.2
3,838,809 + HP15_3645 0.85 +1.0
3,838,814 + HP15_3645 0.85 +0.2
3,838,821 - HP15_3645 0.87 -0.3
3,838,821 - HP15_3645 0.87 -0.2
3,838,919 + -0.0
3,838,951 - +1.2
3,838,996 + -0.7
3,838,996 + -0.5
3,839,004 - +1.5
3,839,029 - HP15_3646 0.12 +1.5
3,839,071 - HP15_3646 0.27 -0.4
3,839,216 - HP15_3646 0.82 -0.7
3,839,217 - HP15_3646 0.82 -0.8
3,839,403 + +0.5
3,839,467 + +0.3
3,839,496 - +0.3
3,839,591 + HP15_3647 0.22 -0.1
3,839,599 - HP15_3647 0.23 +1.6
3,839,652 + HP15_3647 0.31 -1.7
3,839,709 + HP15_3647 0.40 -0.7
3,839,856 - HP15_3647 0.62 +0.3

Or see this region's nucleotide sequence