Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00600 and PGA1_262p00610 are separated by 127 nucleotides PGA1_262p00610 and PGA1_262p00620 are separated by 132 nucleotides PGA1_262p00620 and PGA1_262p00630 are separated by 81 nucleotides
PGA1_262p00600: PGA1_262p00600 - Bacterial putative lipoprotein (DUF940)., at 68,854 to 70,983
_262p00600
PGA1_262p00610: PGA1_262p00610 - metallophosphoesterase, at 71,111 to 71,839
_262p00610
PGA1_262p00620: PGA1_262p00620 - hypothetical protein, at 71,972 to 72,625
_262p00620
PGA1_262p00630: PGA1_262p00630 - Predicted membrane protein, at 72,707 to 73,756
_262p00630
Position (kb) 71
72 Strain fitness (log2 ratio) -1
0
1 at 70.181 kb on + strand, within PGA1_262p00600 at 70.210 kb on + strand, within PGA1_262p00600 at 70.238 kb on - strand, within PGA1_262p00600 at 70.298 kb on + strand, within PGA1_262p00600 at 70.349 kb on - strand, within PGA1_262p00600 at 70.405 kb on - strand, within PGA1_262p00600 at 70.557 kb on + strand, within PGA1_262p00600 at 70.557 kb on + strand, within PGA1_262p00600 at 70.629 kb on + strand, within PGA1_262p00600 at 70.674 kb on - strand, within PGA1_262p00600 at 70.705 kb on + strand, within PGA1_262p00600 at 70.835 kb on - strand at 70.874 kb on + strand at 71.025 kb on + strand at 71.037 kb on + strand at 71.037 kb on + strand at 71.037 kb on + strand at 71.043 kb on - strand at 71.047 kb on + strand at 71.092 kb on - strand at 71.169 kb on + strand at 71.169 kb on + strand at 71.177 kb on - strand at 71.302 kb on - strand, within PGA1_262p00610 at 71.448 kb on + strand, within PGA1_262p00610 at 71.513 kb on - strand, within PGA1_262p00610 at 71.650 kb on + strand, within PGA1_262p00610 at 72.183 kb on - strand, within PGA1_262p00620 at 72.218 kb on - strand, within PGA1_262p00620 at 72.237 kb on - strand, within PGA1_262p00620 at 72.271 kb on + strand, within PGA1_262p00620 at 72.361 kb on + strand, within PGA1_262p00620 at 72.369 kb on - strand, within PGA1_262p00620 at 72.502 kb on + strand, within PGA1_262p00620 at 72.502 kb on + strand, within PGA1_262p00620 at 72.510 kb on - strand, within PGA1_262p00620 at 72.531 kb on + strand, within PGA1_262p00620 at 72.536 kb on + strand, within PGA1_262p00620 at 72.549 kb on + strand, within PGA1_262p00620 at 72.556 kb on + strand, within PGA1_262p00620 at 72.591 kb on + strand at 72.792 kb on + strand at 72.794 kb on - strand at 72.805 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 70,181 + PGA1_262p00600 0.62 -1.6 70,210 + PGA1_262p00600 0.64 -0.1 70,238 - PGA1_262p00600 0.65 +0.1 70,298 + PGA1_262p00600 0.68 +0.8 70,349 - PGA1_262p00600 0.70 +0.0 70,405 - PGA1_262p00600 0.73 -0.6 70,557 + PGA1_262p00600 0.80 -1.0 70,557 + PGA1_262p00600 0.80 +0.3 70,629 + PGA1_262p00600 0.83 -0.9 70,674 - PGA1_262p00600 0.85 +0.4 70,705 + PGA1_262p00600 0.87 +1.2 70,835 - +1.6 70,874 + +0.3 71,025 + -0.1 71,037 + +1.0 71,037 + +0.4 71,037 + +0.7 71,043 - +1.0 71,047 + +1.0 71,092 - +1.5 71,169 + -0.3 71,169 + -0.3 71,177 - -1.6 71,302 - PGA1_262p00610 0.26 +1.3 71,448 + PGA1_262p00610 0.46 +0.0 71,513 - PGA1_262p00610 0.55 +0.3 71,650 + PGA1_262p00610 0.74 +1.3 72,183 - PGA1_262p00620 0.32 -0.4 72,218 - PGA1_262p00620 0.38 +0.0 72,237 - PGA1_262p00620 0.41 +0.9 72,271 + PGA1_262p00620 0.46 +1.0 72,361 + PGA1_262p00620 0.59 +1.2 72,369 - PGA1_262p00620 0.61 +0.1 72,502 + PGA1_262p00620 0.81 +0.0 72,502 + PGA1_262p00620 0.81 +0.3 72,510 - PGA1_262p00620 0.82 -0.4 72,531 + PGA1_262p00620 0.85 +0.3 72,536 + PGA1_262p00620 0.86 +0.0 72,549 + PGA1_262p00620 0.88 +0.4 72,556 + PGA1_262p00620 0.89 -0.5 72,591 + -1.4 72,792 + +0.0 72,794 - +0.5 72,805 - -0.5
Or see this region's nucleotide sequence