Experiment: D-Trehalose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3497 and HP15_3498 are separated by 217 nucleotides HP15_3498 and HP15_3499 are separated by 87 nucleotides HP15_3499 and HP15_3500 are separated by 44 nucleotides
HP15_3497: HP15_3497 - Hsp33-like chaperonin, at 3,681,028 to 3,681,882
_3497
HP15_3498: HP15_3498 - phosphoenolpyruvate carboxykinase (ATP), at 3,682,100 to 3,683,590
_3498
HP15_3499: HP15_3499 - conserved hypothetical protein, membrane, at 3,683,678 to 3,683,956
_3499
HP15_3500: HP15_3500 - conserved hypothetical protein, membrane, at 3,684,001 to 3,685,035
_3500
Position (kb)
3682
3683
3684 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3681.107 kb on + strand at 3681.145 kb on - strand, within HP15_3497 at 3681.305 kb on + strand, within HP15_3497 at 3681.313 kb on - strand, within HP15_3497 at 3681.407 kb on + strand, within HP15_3497 at 3681.415 kb on - strand, within HP15_3497 at 3681.556 kb on - strand, within HP15_3497 at 3681.568 kb on + strand, within HP15_3497 at 3681.654 kb on + strand, within HP15_3497 at 3681.678 kb on + strand, within HP15_3497 at 3681.713 kb on + strand, within HP15_3497 at 3681.721 kb on - strand, within HP15_3497 at 3681.730 kb on - strand, within HP15_3497 at 3681.738 kb on + strand, within HP15_3497 at 3681.770 kb on - strand, within HP15_3497 at 3683.584 kb on + strand at 3683.659 kb on - strand at 3683.669 kb on - strand at 3683.745 kb on - strand, within HP15_3499 at 3683.766 kb on + strand, within HP15_3499 at 3684.084 kb on + strand at 3684.086 kb on + strand at 3684.125 kb on + strand, within HP15_3500 at 3684.200 kb on + strand, within HP15_3500 at 3684.208 kb on - strand, within HP15_3500 at 3684.208 kb on - strand, within HP15_3500 at 3684.215 kb on + strand, within HP15_3500 at 3684.229 kb on + strand, within HP15_3500 at 3684.232 kb on - strand, within HP15_3500 at 3684.234 kb on + strand, within HP15_3500 at 3684.237 kb on - strand, within HP15_3500 at 3684.237 kb on - strand, within HP15_3500 at 3684.242 kb on - strand, within HP15_3500 at 3684.386 kb on + strand, within HP15_3500 at 3684.416 kb on - strand, within HP15_3500 at 3684.436 kb on - strand, within HP15_3500 at 3684.448 kb on + strand, within HP15_3500 at 3684.453 kb on + strand, within HP15_3500 at 3684.461 kb on - strand, within HP15_3500
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose remove 3,681,107 + -0.0 3,681,145 - HP15_3497 0.14 +1.9 3,681,305 + HP15_3497 0.32 +0.7 3,681,313 - HP15_3497 0.33 -0.4 3,681,407 + HP15_3497 0.44 +0.6 3,681,415 - HP15_3497 0.45 +1.3 3,681,556 - HP15_3497 0.62 -1.8 3,681,568 + HP15_3497 0.63 -0.7 3,681,654 + HP15_3497 0.73 +0.6 3,681,678 + HP15_3497 0.76 -0.6 3,681,713 + HP15_3497 0.80 +1.3 3,681,721 - HP15_3497 0.81 +0.0 3,681,730 - HP15_3497 0.82 -0.7 3,681,738 + HP15_3497 0.83 -0.7 3,681,770 - HP15_3497 0.87 -1.7 3,683,584 + -0.1 3,683,659 - -0.1 3,683,669 - +0.3 3,683,745 - HP15_3499 0.24 -0.2 3,683,766 + HP15_3499 0.32 -1.5 3,684,084 + -0.0 3,684,086 + +1.4 3,684,125 + HP15_3500 0.12 +1.0 3,684,200 + HP15_3500 0.19 +1.8 3,684,208 - HP15_3500 0.20 -0.2 3,684,208 - HP15_3500 0.20 -0.3 3,684,215 + HP15_3500 0.21 +1.1 3,684,229 + HP15_3500 0.22 +0.3 3,684,232 - HP15_3500 0.22 -1.2 3,684,234 + HP15_3500 0.23 +1.5 3,684,237 - HP15_3500 0.23 +0.3 3,684,237 - HP15_3500 0.23 -0.3 3,684,242 - HP15_3500 0.23 +1.4 3,684,386 + HP15_3500 0.37 +1.3 3,684,416 - HP15_3500 0.40 +1.4 3,684,436 - HP15_3500 0.42 -0.7 3,684,448 + HP15_3500 0.43 -0.8 3,684,453 + HP15_3500 0.44 -0.4 3,684,461 - HP15_3500 0.44 -1.3
Or see this region's nucleotide sequence