Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03480

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03470 and PGA1_c03480 are separated by 52 nucleotidesPGA1_c03480 and PGA1_c03490 are separated by 61 nucleotides PGA1_c03470: PGA1_c03470 - diaminopimelate decarboxylase LysA, at 332,700 to 333,965 _c03470 PGA1_c03480: PGA1_c03480 - hypothetical protein, at 334,018 to 336,831 _c03480 PGA1_c03490: PGA1_c03490 - hypothetical protein, at 336,893 to 337,774 _c03490 Position (kb) 334 335 336 337Strain fitness (log2 ratio) -2 -1 0 1 2at 333.959 kb on + strandat 333.989 kb on + strandat 333.994 kb on + strandat 333.994 kb on + strandat 333.997 kb on - strandat 333.997 kb on - strandat 333.999 kb on + strandat 334.020 kb on + strandat 334.076 kb on + strandat 334.079 kb on + strandat 334.089 kb on + strandat 334.089 kb on + strandat 334.097 kb on - strandat 334.097 kb on - strandat 334.103 kb on - strandat 334.146 kb on - strandat 334.294 kb on + strandat 334.317 kb on + strand, within PGA1_c03480at 334.332 kb on + strand, within PGA1_c03480at 334.332 kb on + strand, within PGA1_c03480at 334.332 kb on + strand, within PGA1_c03480at 334.340 kb on - strand, within PGA1_c03480at 334.340 kb on - strand, within PGA1_c03480at 334.356 kb on + strand, within PGA1_c03480at 334.518 kb on + strand, within PGA1_c03480at 334.674 kb on + strand, within PGA1_c03480at 334.794 kb on + strand, within PGA1_c03480at 334.794 kb on + strand, within PGA1_c03480at 334.802 kb on - strand, within PGA1_c03480at 334.829 kb on + strand, within PGA1_c03480at 334.993 kb on - strand, within PGA1_c03480at 335.073 kb on + strand, within PGA1_c03480at 335.073 kb on + strand, within PGA1_c03480at 335.115 kb on + strand, within PGA1_c03480at 335.138 kb on - strand, within PGA1_c03480at 335.234 kb on + strand, within PGA1_c03480at 335.313 kb on + strand, within PGA1_c03480at 335.323 kb on + strand, within PGA1_c03480at 335.478 kb on - strand, within PGA1_c03480at 335.480 kb on + strand, within PGA1_c03480at 335.521 kb on - strand, within PGA1_c03480at 335.523 kb on + strand, within PGA1_c03480at 335.548 kb on - strand, within PGA1_c03480at 335.550 kb on + strand, within PGA1_c03480at 335.550 kb on + strand, within PGA1_c03480at 335.550 kb on + strand, within PGA1_c03480at 335.550 kb on + strand, within PGA1_c03480at 335.558 kb on - strand, within PGA1_c03480at 335.573 kb on + strand, within PGA1_c03480at 335.632 kb on - strand, within PGA1_c03480at 335.786 kb on + strand, within PGA1_c03480at 335.799 kb on + strand, within PGA1_c03480at 335.899 kb on + strand, within PGA1_c03480at 336.022 kb on - strand, within PGA1_c03480at 336.029 kb on + strand, within PGA1_c03480at 336.046 kb on + strand, within PGA1_c03480at 336.046 kb on + strand, within PGA1_c03480at 336.046 kb on + strand, within PGA1_c03480at 336.046 kb on + strand, within PGA1_c03480at 336.046 kb on + strand, within PGA1_c03480at 336.059 kb on - strand, within PGA1_c03480at 336.061 kb on + strand, within PGA1_c03480at 336.090 kb on + strand, within PGA1_c03480at 336.098 kb on - strand, within PGA1_c03480at 336.098 kb on - strand, within PGA1_c03480at 336.294 kb on - strand, within PGA1_c03480at 336.361 kb on + strand, within PGA1_c03480at 336.361 kb on + strand, within PGA1_c03480at 336.362 kb on + strand, within PGA1_c03480at 336.376 kb on - strand, within PGA1_c03480at 336.387 kb on + strand, within PGA1_c03480at 336.387 kb on + strand, within PGA1_c03480at 336.387 kb on + strand, within PGA1_c03480at 336.387 kb on + strand, within PGA1_c03480at 336.387 kb on + strand, within PGA1_c03480at 336.387 kb on + strand, within PGA1_c03480at 336.387 kb on + strand, within PGA1_c03480at 336.395 kb on - strand, within PGA1_c03480at 336.402 kb on - strand, within PGA1_c03480at 336.444 kb on + strand, within PGA1_c03480at 336.486 kb on + strand, within PGA1_c03480at 336.550 kb on + strandat 336.550 kb on + strandat 336.608 kb on - strandat 336.618 kb on + strandat 336.715 kb on + strandat 336.715 kb on + strandat 336.715 kb on + strandat 336.715 kb on + strandat 336.779 kb on + strandat 336.811 kb on - strandat 336.832 kb on - strandat 336.869 kb on + strandat 336.904 kb on + strandat 336.912 kb on - strandat 336.912 kb on - strandat 336.912 kb on - strandat 336.978 kb on + strandat 336.984 kb on + strand, within PGA1_c03490at 336.992 kb on - strand, within PGA1_c03490at 337.026 kb on + strand, within PGA1_c03490at 337.194 kb on - strand, within PGA1_c03490at 337.333 kb on - strand, within PGA1_c03490at 337.382 kb on + strand, within PGA1_c03490at 337.719 kb on - strandat 337.776 kb on + strandat 337.783 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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333,959 + -0.5
333,989 + +2.0
333,994 + -0.4
333,994 + -0.7
333,997 - +0.2
333,997 - +0.1
333,999 + -1.3
334,020 + +0.2
334,076 + +0.6
334,079 + +1.3
334,089 + +2.4
334,089 + +0.5
334,097 - -2.2
334,097 - -0.4
334,103 - -0.9
334,146 - +0.6
334,294 + +1.8
334,317 + PGA1_c03480 0.11 -1.1
334,332 + PGA1_c03480 0.11 +0.5
334,332 + PGA1_c03480 0.11 +0.3
334,332 + PGA1_c03480 0.11 +1.3
334,340 - PGA1_c03480 0.11 +0.2
334,340 - PGA1_c03480 0.11 +0.1
334,356 + PGA1_c03480 0.12 +0.9
334,518 + PGA1_c03480 0.18 -0.7
334,674 + PGA1_c03480 0.23 +1.2
334,794 + PGA1_c03480 0.28 +2.1
334,794 + PGA1_c03480 0.28 -2.7
334,802 - PGA1_c03480 0.28 +0.1
334,829 + PGA1_c03480 0.29 +1.6
334,993 - PGA1_c03480 0.35 +0.3
335,073 + PGA1_c03480 0.37 -1.4
335,073 + PGA1_c03480 0.37 +0.1
335,115 + PGA1_c03480 0.39 -1.8
335,138 - PGA1_c03480 0.40 +0.1
335,234 + PGA1_c03480 0.43 -0.6
335,313 + PGA1_c03480 0.46 +0.1
335,323 + PGA1_c03480 0.46 +2.4
335,478 - PGA1_c03480 0.52 +0.3
335,480 + PGA1_c03480 0.52 -0.4
335,521 - PGA1_c03480 0.53 +0.3
335,523 + PGA1_c03480 0.53 +2.0
335,548 - PGA1_c03480 0.54 +0.6
335,550 + PGA1_c03480 0.54 -1.1
335,550 + PGA1_c03480 0.54 +0.3
335,550 + PGA1_c03480 0.54 +0.3
335,550 + PGA1_c03480 0.54 -1.0
335,558 - PGA1_c03480 0.55 -0.5
335,573 + PGA1_c03480 0.55 +0.3
335,632 - PGA1_c03480 0.57 +0.3
335,786 + PGA1_c03480 0.63 -0.5
335,799 + PGA1_c03480 0.63 -0.5
335,899 + PGA1_c03480 0.67 +1.3
336,022 - PGA1_c03480 0.71 +0.4
336,029 + PGA1_c03480 0.71 -1.9
336,046 + PGA1_c03480 0.72 -0.4
336,046 + PGA1_c03480 0.72 +1.6
336,046 + PGA1_c03480 0.72 +1.3
336,046 + PGA1_c03480 0.72 +0.5
336,046 + PGA1_c03480 0.72 +0.5
336,059 - PGA1_c03480 0.73 +0.6
336,061 + PGA1_c03480 0.73 +0.1
336,090 + PGA1_c03480 0.74 -0.4
336,098 - PGA1_c03480 0.74 +0.9
336,098 - PGA1_c03480 0.74 +1.2
336,294 - PGA1_c03480 0.81 -0.5
336,361 + PGA1_c03480 0.83 -0.6
336,361 + PGA1_c03480 0.83 -0.6
336,362 + PGA1_c03480 0.83 -1.4
336,376 - PGA1_c03480 0.84 +0.4
336,387 + PGA1_c03480 0.84 +0.3
336,387 + PGA1_c03480 0.84 +0.5
336,387 + PGA1_c03480 0.84 +0.2
336,387 + PGA1_c03480 0.84 -0.9
336,387 + PGA1_c03480 0.84 -0.1
336,387 + PGA1_c03480 0.84 -2.2
336,387 + PGA1_c03480 0.84 +1.3
336,395 - PGA1_c03480 0.84 +1.3
336,402 - PGA1_c03480 0.85 +0.4
336,444 + PGA1_c03480 0.86 +0.9
336,486 + PGA1_c03480 0.88 -0.2
336,550 + +0.4
336,550 + -0.6
336,608 - +0.6
336,618 + -0.3
336,715 + +0.9
336,715 + +0.5
336,715 + +0.6
336,715 + +0.6
336,779 + +0.4
336,811 - -0.3
336,832 - -0.0
336,869 + -0.0
336,904 + -0.8
336,912 - +0.1
336,912 - +0.4
336,912 - -0.3
336,978 + -1.1
336,984 + PGA1_c03490 0.10 -2.4
336,992 - PGA1_c03490 0.11 -1.1
337,026 + PGA1_c03490 0.15 +0.3
337,194 - PGA1_c03490 0.34 -2.4
337,333 - PGA1_c03490 0.50 -2.7
337,382 + PGA1_c03490 0.55 -2.5
337,719 - -1.9
337,776 + -0.7
337,783 - -0.4

Or see this region's nucleotide sequence