Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03450 and PGA1_c03460 are separated by 81 nucleotides PGA1_c03460 and PGA1_c03470 are separated by 52 nucleotides
PGA1_c03450: PGA1_c03450 - argininosuccinate lyase ArgH, at 331,010 to 332,380
_c03450
PGA1_c03460: PGA1_c03460 - hypothetical protein, at 332,462 to 332,647
_c03460
PGA1_c03470: PGA1_c03470 - diaminopimelate decarboxylase LysA, at 332,700 to 333,965
_c03470
Position (kb) 332
333 Strain fitness (log2 ratio) -1
0
1
2 at 331.918 kb on + strand, within PGA1_c03450 at 332.366 kb on - strand at 332.413 kb on - strand at 332.463 kb on - strand at 332.469 kb on + strand at 332.487 kb on - strand, within PGA1_c03460 at 332.492 kb on - strand, within PGA1_c03460 at 332.502 kb on + strand, within PGA1_c03460 at 332.591 kb on - strand, within PGA1_c03460 at 332.601 kb on + strand, within PGA1_c03460 at 332.601 kb on + strand, within PGA1_c03460 at 332.601 kb on + strand, within PGA1_c03460 at 332.601 kb on + strand, within PGA1_c03460 at 332.601 kb on + strand, within PGA1_c03460 at 332.609 kb on - strand, within PGA1_c03460 at 332.609 kb on - strand, within PGA1_c03460 at 332.609 kb on - strand, within PGA1_c03460 at 332.609 kb on - strand, within PGA1_c03460 at 332.609 kb on - strand, within PGA1_c03460 at 332.611 kb on + strand, within PGA1_c03460 at 332.611 kb on + strand, within PGA1_c03460 at 332.611 kb on + strand, within PGA1_c03460 at 332.619 kb on - strand, within PGA1_c03460 at 332.619 kb on - strand, within PGA1_c03460 at 332.628 kb on + strand, within PGA1_c03460 at 332.634 kb on + strand at 332.634 kb on + strand at 332.634 kb on + strand at 332.634 kb on + strand at 332.642 kb on + strand at 332.642 kb on + strand at 332.642 kb on + strand at 332.642 kb on + strand at 332.642 kb on - strand at 332.650 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 331,918 + PGA1_c03450 0.66 -1.4 332,366 - +2.2 332,413 - -0.4 332,463 - -0.8 332,469 + -0.4 332,487 - PGA1_c03460 0.13 -0.3 332,492 - PGA1_c03460 0.16 +0.3 332,502 + PGA1_c03460 0.22 -0.8 332,591 - PGA1_c03460 0.69 +1.2 332,601 + PGA1_c03460 0.75 +0.1 332,601 + PGA1_c03460 0.75 -0.4 332,601 + PGA1_c03460 0.75 +1.0 332,601 + PGA1_c03460 0.75 +0.0 332,601 + PGA1_c03460 0.75 -0.1 332,609 - PGA1_c03460 0.79 +1.0 332,609 - PGA1_c03460 0.79 -0.1 332,609 - PGA1_c03460 0.79 -0.8 332,609 - PGA1_c03460 0.79 -0.1 332,609 - PGA1_c03460 0.79 -0.6 332,611 + PGA1_c03460 0.80 +0.6 332,611 + PGA1_c03460 0.80 +0.3 332,611 + PGA1_c03460 0.80 +0.0 332,619 - PGA1_c03460 0.84 +0.5 332,619 - PGA1_c03460 0.84 +1.7 332,628 + PGA1_c03460 0.89 +0.4 332,634 + +1.9 332,634 + -0.4 332,634 + +0.5 332,634 + -0.3 332,642 + -0.2 332,642 + -1.1 332,642 + +2.2 332,642 + -0.8 332,642 - -1.4 332,650 - -0.3
Or see this region's nucleotide sequence