Experiment: D-Trehalose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2753 and HP15_2754 are separated by 227 nucleotides HP15_2754 and HP15_2755 overlap by 4 nucleotides HP15_2755 and HP15_2756 are separated by 10 nucleotides
HP15_2753: HP15_2753 - transcriptional regulator protein, LysR family, at 2,908,044 to 2,908,904
_2753
HP15_2754: HP15_2754 - conserved hypothetical protein, at 2,909,132 to 2,909,371
_2754
HP15_2755: HP15_2755 - homocysteine S-methyltransferase family protein, at 2,909,368 to 2,910,273
_2755
HP15_2756: HP15_2756 - metallo-beta-lactamase superfamily protein, at 2,910,284 to 2,912,314
_2756
Position (kb)
2909
2910 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2908.226 kb on + strand, within HP15_2753 at 2908.246 kb on + strand, within HP15_2753 at 2908.260 kb on + strand, within HP15_2753 at 2908.272 kb on + strand, within HP15_2753 at 2908.296 kb on - strand, within HP15_2753 at 2908.426 kb on - strand, within HP15_2753 at 2908.464 kb on + strand, within HP15_2753 at 2908.472 kb on - strand, within HP15_2753 at 2908.473 kb on - strand, within HP15_2753 at 2908.473 kb on - strand, within HP15_2753 at 2908.796 kb on + strand, within HP15_2753 at 2908.877 kb on + strand at 2909.159 kb on - strand, within HP15_2754 at 2909.338 kb on + strand, within HP15_2754 at 2909.622 kb on + strand, within HP15_2755 at 2909.622 kb on + strand, within HP15_2755 at 2909.623 kb on - strand, within HP15_2755 at 2909.734 kb on + strand, within HP15_2755 at 2909.747 kb on - strand, within HP15_2755 at 2909.791 kb on - strand, within HP15_2755 at 2909.796 kb on - strand, within HP15_2755 at 2909.796 kb on - strand, within HP15_2755 at 2909.883 kb on - strand, within HP15_2755 at 2909.937 kb on + strand, within HP15_2755 at 2909.948 kb on + strand, within HP15_2755 at 2910.021 kb on + strand, within HP15_2755 at 2910.021 kb on - strand, within HP15_2755 at 2910.114 kb on + strand, within HP15_2755 at 2910.122 kb on - strand, within HP15_2755 at 2910.122 kb on - strand, within HP15_2755 at 2910.277 kb on + strand at 2910.282 kb on + strand at 2910.282 kb on + strand at 2910.285 kb on - strand at 2910.303 kb on + strand at 2910.315 kb on + strand at 2910.316 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose remove 2,908,226 + HP15_2753 0.21 +0.2 2,908,246 + HP15_2753 0.23 -1.0 2,908,260 + HP15_2753 0.25 -1.0 2,908,272 + HP15_2753 0.26 +1.1 2,908,296 - HP15_2753 0.29 +2.3 2,908,426 - HP15_2753 0.44 +0.3 2,908,464 + HP15_2753 0.49 -1.4 2,908,472 - HP15_2753 0.50 -0.2 2,908,473 - HP15_2753 0.50 +1.1 2,908,473 - HP15_2753 0.50 +0.7 2,908,796 + HP15_2753 0.87 -0.4 2,908,877 + -0.7 2,909,159 - HP15_2754 0.11 -0.8 2,909,338 + HP15_2754 0.86 +0.0 2,909,622 + HP15_2755 0.28 -0.5 2,909,622 + HP15_2755 0.28 -0.8 2,909,623 - HP15_2755 0.28 -1.1 2,909,734 + HP15_2755 0.40 -1.3 2,909,747 - HP15_2755 0.42 -0.1 2,909,791 - HP15_2755 0.47 -0.2 2,909,796 - HP15_2755 0.47 -0.6 2,909,796 - HP15_2755 0.47 -2.3 2,909,883 - HP15_2755 0.57 +0.0 2,909,937 + HP15_2755 0.63 -0.4 2,909,948 + HP15_2755 0.64 -0.9 2,910,021 + HP15_2755 0.72 +1.1 2,910,021 - HP15_2755 0.72 +0.2 2,910,114 + HP15_2755 0.82 -1.2 2,910,122 - HP15_2755 0.83 +1.0 2,910,122 - HP15_2755 0.83 -0.8 2,910,277 + +1.7 2,910,282 + +1.6 2,910,282 + +0.0 2,910,285 - +0.0 2,910,303 + -0.5 2,910,315 + -1.0 2,910,316 - +0.0
Or see this region's nucleotide sequence