Experiment: D-Trehalose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2693 and HP15_2694 overlap by 4 nucleotides HP15_2694 and HP15_2695 overlap by 4 nucleotides HP15_2695 and HP15_2696 are separated by 59 nucleotides
HP15_2693: HP15_2693 - 3-hydroxyacyl-CoA dehydrogenase PaaC (EC 1.1.1.-) (from data) , at 2,845,117 to 2,846,637
_2693
HP15_2694: HP15_2694 - phenylacetic acid degradation protein PaaD, at 2,846,634 to 2,847,080
_2694
HP15_2695: HP15_2695 - Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) (from data) , at 2,847,077 to 2,848,324
_2695
HP15_2696: HP15_2696 - phenylacetate-CoA ligase, at 2,848,384 to 2,849,694
_2696
Position (kb)
2847
2848
2849 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2846.088 kb on + strand, within HP15_2693 at 2846.134 kb on - strand, within HP15_2693 at 2846.425 kb on + strand, within HP15_2693 at 2846.481 kb on - strand, within HP15_2693 at 2846.481 kb on - strand, within HP15_2693 at 2846.483 kb on + strand, within HP15_2693 at 2846.494 kb on + strand at 2846.582 kb on + strand at 2846.678 kb on + strand at 2846.712 kb on + strand, within HP15_2694 at 2846.741 kb on + strand, within HP15_2694 at 2846.741 kb on + strand, within HP15_2694 at 2846.805 kb on + strand, within HP15_2694 at 2846.814 kb on - strand, within HP15_2694 at 2846.890 kb on + strand, within HP15_2694 at 2846.988 kb on - strand, within HP15_2694 at 2847.010 kb on + strand, within HP15_2694 at 2847.018 kb on - strand, within HP15_2694 at 2847.028 kb on - strand, within HP15_2694 at 2847.034 kb on + strand, within HP15_2694 at 2847.140 kb on - strand at 2847.154 kb on + strand at 2847.221 kb on + strand, within HP15_2695 at 2847.229 kb on - strand, within HP15_2695 at 2847.259 kb on - strand, within HP15_2695 at 2847.269 kb on - strand, within HP15_2695 at 2847.422 kb on + strand, within HP15_2695 at 2847.457 kb on - strand, within HP15_2695 at 2847.642 kb on + strand, within HP15_2695 at 2847.662 kb on - strand, within HP15_2695 at 2847.900 kb on + strand, within HP15_2695 at 2847.908 kb on - strand, within HP15_2695 at 2847.978 kb on - strand, within HP15_2695 at 2848.073 kb on + strand, within HP15_2695 at 2848.078 kb on + strand, within HP15_2695 at 2848.179 kb on + strand, within HP15_2695 at 2848.202 kb on - strand at 2848.280 kb on - strand at 2848.282 kb on + strand at 2848.350 kb on + strand at 2848.374 kb on + strand at 2848.436 kb on + strand at 2848.467 kb on - strand at 2848.522 kb on + strand, within HP15_2696 at 2848.706 kb on + strand, within HP15_2696 at 2848.706 kb on + strand, within HP15_2696 at 2848.777 kb on + strand, within HP15_2696 at 2848.781 kb on + strand, within HP15_2696 at 2848.798 kb on + strand, within HP15_2696 at 2848.810 kb on + strand, within HP15_2696 at 2848.813 kb on - strand, within HP15_2696 at 2848.873 kb on - strand, within HP15_2696 at 2849.046 kb on + strand, within HP15_2696 at 2849.100 kb on + strand, within HP15_2696 at 2849.134 kb on - strand, within HP15_2696 at 2849.254 kb on + strand, within HP15_2696 at 2849.256 kb on - strand, within HP15_2696 at 2849.303 kb on + strand, within HP15_2696 at 2849.311 kb on - strand, within HP15_2696
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose remove 2,846,088 + HP15_2693 0.64 -0.6 2,846,134 - HP15_2693 0.67 +1.2 2,846,425 + HP15_2693 0.86 -0.6 2,846,481 - HP15_2693 0.90 -1.0 2,846,481 - HP15_2693 0.90 +1.1 2,846,483 + HP15_2693 0.90 -0.2 2,846,494 + -1.8 2,846,582 + +1.4 2,846,678 + +1.6 2,846,712 + HP15_2694 0.17 -1.9 2,846,741 + HP15_2694 0.24 +0.0 2,846,741 + HP15_2694 0.24 -0.4 2,846,805 + HP15_2694 0.38 -0.6 2,846,814 - HP15_2694 0.40 -0.4 2,846,890 + HP15_2694 0.57 -0.5 2,846,988 - HP15_2694 0.79 -0.4 2,847,010 + HP15_2694 0.84 -0.2 2,847,018 - HP15_2694 0.86 -0.4 2,847,028 - HP15_2694 0.88 +1.1 2,847,034 + HP15_2694 0.89 -1.1 2,847,140 - +0.6 2,847,154 + -2.3 2,847,221 + HP15_2695 0.12 +1.0 2,847,229 - HP15_2695 0.12 -0.5 2,847,259 - HP15_2695 0.15 +2.1 2,847,269 - HP15_2695 0.15 -0.2 2,847,422 + HP15_2695 0.28 -0.5 2,847,457 - HP15_2695 0.30 +0.2 2,847,642 + HP15_2695 0.45 -0.7 2,847,662 - HP15_2695 0.47 -0.5 2,847,900 + HP15_2695 0.66 +1.8 2,847,908 - HP15_2695 0.67 +1.8 2,847,978 - HP15_2695 0.72 -0.0 2,848,073 + HP15_2695 0.80 -0.8 2,848,078 + HP15_2695 0.80 -0.6 2,848,179 + HP15_2695 0.88 -0.7 2,848,202 - -1.8 2,848,280 - +1.5 2,848,282 + +1.8 2,848,350 + +0.2 2,848,374 + +0.8 2,848,436 + +2.0 2,848,467 - +0.0 2,848,522 + HP15_2696 0.11 +1.1 2,848,706 + HP15_2696 0.25 +1.0 2,848,706 + HP15_2696 0.25 +1.2 2,848,777 + HP15_2696 0.30 +0.6 2,848,781 + HP15_2696 0.30 -0.0 2,848,798 + HP15_2696 0.32 -0.5 2,848,810 + HP15_2696 0.32 +0.2 2,848,813 - HP15_2696 0.33 -0.4 2,848,873 - HP15_2696 0.37 -0.0 2,849,046 + HP15_2696 0.50 +1.6 2,849,100 + HP15_2696 0.55 -2.0 2,849,134 - HP15_2696 0.57 -1.0 2,849,254 + HP15_2696 0.66 -0.4 2,849,256 - HP15_2696 0.67 -0.6 2,849,303 + HP15_2696 0.70 +1.7 2,849,311 - HP15_2696 0.71 -0.1
Or see this region's nucleotide sequence