Experiment: D-Trehalose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2553 and HP15_2554 are separated by 154 nucleotides HP15_2554 and HP15_2555 are separated by 66 nucleotides HP15_2555 and HP15_2556 are separated by 38 nucleotides
HP15_2553: HP15_2553 - oxidoreductase, FAD-binding protein, at 2,699,097 to 2,700,536
_2553
HP15_2554: HP15_2554 - D-3-phosphoglycerate dehydrogenase-like protein, at 2,700,691 to 2,701,920
_2554
HP15_2555: HP15_2555 - OmpA/MotB domain protein, at 2,701,987 to 2,702,643
_2555
HP15_2556: HP15_2556 - lysophospholipase, at 2,702,682 to 2,703,689
_2556
Position (kb)
2700
2701
2702 Strain fitness (log2 ratio)
-1
0
1
2 at 2700.523 kb on - strand at 2702.058 kb on + strand, within HP15_2555 at 2702.103 kb on + strand, within HP15_2555 at 2702.200 kb on - strand, within HP15_2555 at 2702.224 kb on + strand, within HP15_2555 at 2702.269 kb on - strand, within HP15_2555 at 2702.450 kb on + strand, within HP15_2555 at 2702.570 kb on + strand, within HP15_2555 at 2702.577 kb on - strand, within HP15_2555 at 2702.578 kb on - strand at 2702.601 kb on + strand at 2702.653 kb on - strand at 2702.862 kb on - strand, within HP15_2556 at 2702.862 kb on - strand, within HP15_2556 at 2702.871 kb on - strand, within HP15_2556 at 2702.908 kb on + strand, within HP15_2556
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose remove 2,700,523 - -0.7 2,702,058 + HP15_2555 0.11 +0.3 2,702,103 + HP15_2555 0.18 -0.1 2,702,200 - HP15_2555 0.32 +0.7 2,702,224 + HP15_2555 0.36 +0.4 2,702,269 - HP15_2555 0.43 -0.8 2,702,450 + HP15_2555 0.70 +0.5 2,702,570 + HP15_2555 0.89 -0.9 2,702,577 - HP15_2555 0.90 +1.6 2,702,578 - -1.0 2,702,601 + -0.1 2,702,653 - +0.9 2,702,862 - HP15_2556 0.18 -0.5 2,702,862 - HP15_2556 0.18 +2.1 2,702,871 - HP15_2556 0.19 -1.4 2,702,908 + HP15_2556 0.22 +1.9
Or see this region's nucleotide sequence