Strain Fitness in Marinobacter adhaerens HP15 around HP15_2423

Experiment: D-Trehalose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2422 and HP15_2423 are separated by 486 nucleotidesHP15_2423 and HP15_2424 are separated by 129 nucleotides HP15_2422: HP15_2422 - secreted protein containing DUF1302, at 2,561,686 to 2,563,536 _2422 HP15_2423: HP15_2423 - acyl-CoA thiolase, at 2,564,023 to 2,565,162 _2423 HP15_2424: HP15_2424 - AFG1-family ATPase, at 2,565,292 to 2,566,425 _2424 Position (kb) 2564 2565 2566Strain fitness (log2 ratio) -1 0 1 2at 2563.092 kb on - strand, within HP15_2422at 2563.111 kb on + strand, within HP15_2422at 2563.168 kb on - strand, within HP15_2422at 2563.176 kb on + strand, within HP15_2422at 2563.176 kb on + strand, within HP15_2422at 2563.337 kb on + strand, within HP15_2422at 2563.337 kb on + strand, within HP15_2422at 2563.345 kb on - strand, within HP15_2422at 2563.345 kb on - strand, within HP15_2422at 2563.345 kb on - strand, within HP15_2422at 2563.345 kb on - strand, within HP15_2422at 2563.414 kb on - strandat 2563.414 kb on - strandat 2563.570 kb on + strandat 2563.583 kb on - strandat 2563.604 kb on - strandat 2563.613 kb on - strandat 2563.930 kb on - strandat 2563.931 kb on - strandat 2563.942 kb on - strandat 2564.052 kb on - strandat 2564.053 kb on - strandat 2564.109 kb on - strandat 2564.141 kb on - strand, within HP15_2423at 2564.162 kb on + strand, within HP15_2423at 2564.214 kb on + strand, within HP15_2423at 2564.345 kb on + strand, within HP15_2423at 2564.391 kb on - strand, within HP15_2423at 2564.447 kb on - strand, within HP15_2423at 2564.609 kb on + strand, within HP15_2423at 2564.649 kb on + strand, within HP15_2423at 2564.654 kb on - strand, within HP15_2423at 2564.686 kb on + strand, within HP15_2423at 2564.694 kb on - strand, within HP15_2423at 2564.751 kb on + strand, within HP15_2423at 2564.759 kb on - strand, within HP15_2423at 2564.767 kb on + strand, within HP15_2423at 2564.791 kb on + strand, within HP15_2423at 2564.848 kb on - strand, within HP15_2423at 2564.899 kb on - strand, within HP15_2423at 2565.078 kb on - strandat 2565.085 kb on + strandat 2565.119 kb on - strandat 2565.134 kb on - strandat 2565.136 kb on + strandat 2565.218 kb on + strandat 2565.257 kb on + strandat 2565.265 kb on - strandat 2565.265 kb on - strandat 2565.265 kb on - strandat 2565.272 kb on + strandat 2565.301 kb on + strandat 2565.316 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose
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2,563,092 - HP15_2422 0.76 +0.3
2,563,111 + HP15_2422 0.77 -0.0
2,563,168 - HP15_2422 0.80 +0.2
2,563,176 + HP15_2422 0.80 +0.1
2,563,176 + HP15_2422 0.80 -0.3
2,563,337 + HP15_2422 0.89 -0.8
2,563,337 + HP15_2422 0.89 +1.4
2,563,345 - HP15_2422 0.90 +0.2
2,563,345 - HP15_2422 0.90 -0.6
2,563,345 - HP15_2422 0.90 -0.5
2,563,345 - HP15_2422 0.90 +1.2
2,563,414 - -0.2
2,563,414 - -1.1
2,563,570 + +1.8
2,563,583 - +0.6
2,563,604 - +1.5
2,563,613 - +1.4
2,563,930 - -0.2
2,563,931 - -0.5
2,563,942 - +0.1
2,564,052 - -0.2
2,564,053 - -0.6
2,564,109 - -0.5
2,564,141 - HP15_2423 0.10 +0.7
2,564,162 + HP15_2423 0.12 +0.8
2,564,214 + HP15_2423 0.17 -0.5
2,564,345 + HP15_2423 0.28 +1.4
2,564,391 - HP15_2423 0.32 -0.8
2,564,447 - HP15_2423 0.37 +1.1
2,564,609 + HP15_2423 0.51 -0.3
2,564,649 + HP15_2423 0.55 -0.7
2,564,654 - HP15_2423 0.55 +0.8
2,564,686 + HP15_2423 0.58 -1.0
2,564,694 - HP15_2423 0.59 +1.3
2,564,751 + HP15_2423 0.64 -0.7
2,564,759 - HP15_2423 0.65 +0.1
2,564,767 + HP15_2423 0.65 +1.2
2,564,791 + HP15_2423 0.67 -0.7
2,564,848 - HP15_2423 0.72 +0.8
2,564,899 - HP15_2423 0.77 +0.4
2,565,078 - -0.2
2,565,085 + +0.1
2,565,119 - -0.3
2,565,134 - -0.4
2,565,136 + -0.1
2,565,218 + +0.5
2,565,257 + -0.3
2,565,265 - -0.9
2,565,265 - -1.2
2,565,265 - -0.5
2,565,272 + -1.6
2,565,301 + -0.2
2,565,316 - -0.4

Or see this region's nucleotide sequence