Experiment: D-Trehalose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2402 and HP15_2403 are separated by 358 nucleotides HP15_2403 and HP15_2404 are separated by 149 nucleotides HP15_2404 and HP15_2405 are separated by 95 nucleotides
HP15_2402: HP15_2402 - conserved hypothetical protein, at 2,535,565 to 2,536,908
_2402
HP15_2403: HP15_2403 - lipopolysaccharide biosynthesis, at 2,537,267 to 2,537,971
_2403
HP15_2404: HP15_2404 - transcriptional activator RfaH, at 2,538,121 to 2,538,501
_2404
HP15_2405: HP15_2405 - 3'(2'), 5'-bisphosphate nucleotidase, at 2,538,597 to 2,539,373
_2405
Position (kb)
2537
2538 Strain fitness (log2 ratio)
-2
-1
0
1 at 2536.307 kb on + strand, within HP15_2402 at 2536.323 kb on - strand, within HP15_2402 at 2536.340 kb on + strand, within HP15_2402 at 2536.489 kb on + strand, within HP15_2402 at 2536.496 kb on - strand, within HP15_2402 at 2536.541 kb on - strand, within HP15_2402 at 2536.816 kb on + strand at 2536.927 kb on + strand at 2536.962 kb on + strand at 2536.962 kb on + strand at 2537.042 kb on - strand at 2537.080 kb on + strand at 2537.147 kb on + strand at 2537.225 kb on - strand at 2537.300 kb on + strand at 2537.373 kb on + strand, within HP15_2403 at 2537.441 kb on + strand, within HP15_2403 at 2537.594 kb on + strand, within HP15_2403 at 2537.597 kb on - strand, within HP15_2403 at 2537.599 kb on + strand, within HP15_2403 at 2537.612 kb on + strand, within HP15_2403 at 2537.620 kb on - strand, within HP15_2403 at 2537.921 kb on - strand at 2538.103 kb on + strand at 2538.110 kb on + strand at 2538.110 kb on + strand at 2538.139 kb on + strand at 2538.253 kb on + strand, within HP15_2404 at 2538.263 kb on + strand, within HP15_2404 at 2538.263 kb on - strand, within HP15_2404 at 2538.310 kb on + strand, within HP15_2404 at 2538.320 kb on + strand, within HP15_2404 at 2538.345 kb on - strand, within HP15_2404 at 2538.345 kb on - strand, within HP15_2404 at 2538.544 kb on + strand at 2538.544 kb on + strand at 2538.577 kb on + strand at 2538.577 kb on + strand at 2538.585 kb on - strand at 2538.603 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose remove 2,536,307 + HP15_2402 0.55 -0.2 2,536,323 - HP15_2402 0.56 -1.7 2,536,340 + HP15_2402 0.58 +1.1 2,536,489 + HP15_2402 0.69 +0.1 2,536,496 - HP15_2402 0.69 -0.7 2,536,541 - HP15_2402 0.73 -0.9 2,536,816 + +0.1 2,536,927 + -0.5 2,536,962 + -1.6 2,536,962 + -1.8 2,537,042 - +1.4 2,537,080 + -0.4 2,537,147 + -0.4 2,537,225 - -1.2 2,537,300 + -0.9 2,537,373 + HP15_2403 0.15 +0.7 2,537,441 + HP15_2403 0.25 -0.3 2,537,594 + HP15_2403 0.46 +1.7 2,537,597 - HP15_2403 0.47 -1.0 2,537,599 + HP15_2403 0.47 +1.4 2,537,612 + HP15_2403 0.49 -0.2 2,537,620 - HP15_2403 0.50 +1.4 2,537,921 - -0.9 2,538,103 + +1.4 2,538,110 + -0.2 2,538,110 + -0.1 2,538,139 + +1.3 2,538,253 + HP15_2404 0.35 -0.6 2,538,263 + HP15_2404 0.37 -0.4 2,538,263 - HP15_2404 0.37 -0.2 2,538,310 + HP15_2404 0.50 +0.6 2,538,320 + HP15_2404 0.52 +0.8 2,538,345 - HP15_2404 0.59 -1.0 2,538,345 - HP15_2404 0.59 -1.2 2,538,544 + +0.7 2,538,544 + -0.9 2,538,577 + -0.8 2,538,577 + +0.9 2,538,585 - +0.1 2,538,603 - +1.0
Or see this region's nucleotide sequence