Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02480 and PGA1_c02490 are separated by 16 nucleotides PGA1_c02490 and PGA1_c02500 are separated by 7 nucleotides PGA1_c02500 and PGA1_c02510 are separated by 163 nucleotides
PGA1_c02480: PGA1_c02480 - Uncharacterized conserved protein, at 230,949 to 232,286
_c02480
PGA1_c02490: PGA1_c02490 - sporulation protein R-like protein, at 232,303 to 233,781
_c02490
PGA1_c02500: PGA1_c02500 - transcriptional regulator, GntR family, at 233,789 to 234,454
_c02500
PGA1_c02510: PGA1_c02510 - S-(hydroxymethyl)glutathione dehydrogenase FrmA, at 234,618 to 235,733
_c02510
Position (kb) 232
233
234 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 231.346 kb on + strand, within PGA1_c02480 at 231.346 kb on + strand, within PGA1_c02480 at 231.346 kb on + strand, within PGA1_c02480 at 231.346 kb on + strand, within PGA1_c02480 at 231.346 kb on + strand, within PGA1_c02480 at 231.354 kb on - strand, within PGA1_c02480 at 231.378 kb on + strand, within PGA1_c02480 at 231.378 kb on + strand, within PGA1_c02480 at 231.414 kb on + strand, within PGA1_c02480 at 231.422 kb on - strand, within PGA1_c02480 at 231.422 kb on - strand, within PGA1_c02480 at 231.443 kb on + strand, within PGA1_c02480 at 231.484 kb on + strand, within PGA1_c02480 at 231.497 kb on + strand, within PGA1_c02480 at 231.502 kb on + strand, within PGA1_c02480 at 231.502 kb on + strand, within PGA1_c02480 at 231.543 kb on + strand, within PGA1_c02480 at 231.584 kb on + strand, within PGA1_c02480 at 231.586 kb on - strand, within PGA1_c02480 at 231.608 kb on + strand, within PGA1_c02480 at 231.615 kb on - strand, within PGA1_c02480 at 231.616 kb on - strand, within PGA1_c02480 at 231.618 kb on - strand, within PGA1_c02480 at 231.623 kb on - strand, within PGA1_c02480 at 231.660 kb on + strand, within PGA1_c02480 at 231.722 kb on - strand, within PGA1_c02480 at 231.742 kb on + strand, within PGA1_c02480 at 231.744 kb on + strand, within PGA1_c02480 at 231.811 kb on + strand, within PGA1_c02480 at 231.811 kb on + strand, within PGA1_c02480 at 231.811 kb on + strand, within PGA1_c02480 at 231.811 kb on + strand, within PGA1_c02480 at 231.811 kb on + strand, within PGA1_c02480 at 231.811 kb on + strand, within PGA1_c02480 at 231.811 kb on + strand, within PGA1_c02480 at 231.811 kb on + strand, within PGA1_c02480 at 231.811 kb on + strand, within PGA1_c02480 at 231.811 kb on + strand, within PGA1_c02480 at 231.819 kb on - strand, within PGA1_c02480 at 231.819 kb on - strand, within PGA1_c02480 at 231.819 kb on - strand, within PGA1_c02480 at 231.819 kb on - strand, within PGA1_c02480 at 231.819 kb on - strand, within PGA1_c02480 at 231.819 kb on - strand, within PGA1_c02480 at 231.819 kb on - strand, within PGA1_c02480 at 231.819 kb on - strand, within PGA1_c02480 at 231.819 kb on - strand, within PGA1_c02480 at 231.819 kb on - strand, within PGA1_c02480 at 231.819 kb on - strand, within PGA1_c02480 at 231.819 kb on - strand, within PGA1_c02480 at 231.819 kb on - strand, within PGA1_c02480 at 231.819 kb on - strand, within PGA1_c02480 at 231.819 kb on - strand, within PGA1_c02480 at 231.819 kb on - strand, within PGA1_c02480 at 231.819 kb on - strand, within PGA1_c02480 at 231.819 kb on - strand, within PGA1_c02480 at 231.860 kb on + strand, within PGA1_c02480 at 231.878 kb on - strand, within PGA1_c02480 at 231.912 kb on + strand, within PGA1_c02480 at 231.919 kb on - strand, within PGA1_c02480 at 231.946 kb on + strand, within PGA1_c02480 at 231.977 kb on + strand, within PGA1_c02480 at 231.977 kb on + strand, within PGA1_c02480 at 231.977 kb on + strand, within PGA1_c02480 at 231.985 kb on - strand, within PGA1_c02480 at 231.985 kb on - strand, within PGA1_c02480 at 232.031 kb on + strand, within PGA1_c02480 at 232.031 kb on + strand, within PGA1_c02480 at 232.041 kb on - strand, within PGA1_c02480 at 232.073 kb on + strand, within PGA1_c02480 at 232.073 kb on + strand, within PGA1_c02480 at 232.073 kb on + strand, within PGA1_c02480 at 232.126 kb on + strand, within PGA1_c02480 at 232.134 kb on - strand, within PGA1_c02480 at 232.134 kb on - strand, within PGA1_c02480 at 232.134 kb on - strand, within PGA1_c02480 at 232.134 kb on - strand, within PGA1_c02480 at 232.134 kb on - strand, within PGA1_c02480 at 232.166 kb on + strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.256 kb on + strand at 232.256 kb on + strand at 232.282 kb on + strand at 232.318 kb on + strand at 232.326 kb on - strand at 232.343 kb on - strand at 232.392 kb on + strand at 232.400 kb on - strand at 232.405 kb on - strand at 232.416 kb on + strand at 232.416 kb on - strand at 232.441 kb on + strand at 232.518 kb on + strand, within PGA1_c02490 at 232.536 kb on - strand, within PGA1_c02490 at 232.537 kb on + strand, within PGA1_c02490 at 232.537 kb on + strand, within PGA1_c02490 at 232.545 kb on - strand, within PGA1_c02490 at 232.614 kb on - strand, within PGA1_c02490 at 232.680 kb on + strand, within PGA1_c02490 at 232.685 kb on + strand, within PGA1_c02490 at 232.693 kb on - strand, within PGA1_c02490 at 232.693 kb on - strand, within PGA1_c02490 at 232.693 kb on - strand, within PGA1_c02490 at 232.704 kb on - strand, within PGA1_c02490 at 232.753 kb on - strand, within PGA1_c02490 at 232.754 kb on + strand, within PGA1_c02490 at 232.814 kb on - strand, within PGA1_c02490 at 232.850 kb on + strand, within PGA1_c02490 at 232.944 kb on - strand, within PGA1_c02490 at 232.946 kb on + strand, within PGA1_c02490 at 232.946 kb on + strand, within PGA1_c02490 at 232.946 kb on + strand, within PGA1_c02490 at 232.954 kb on - strand, within PGA1_c02490 at 232.954 kb on - strand, within PGA1_c02490 at 232.956 kb on + strand, within PGA1_c02490 at 232.956 kb on + strand, within PGA1_c02490 at 232.956 kb on + strand, within PGA1_c02490 at 232.956 kb on + strand, within PGA1_c02490 at 232.964 kb on - strand, within PGA1_c02490 at 232.964 kb on - strand, within PGA1_c02490 at 232.964 kb on - strand, within PGA1_c02490 at 232.964 kb on - strand, within PGA1_c02490 at 232.964 kb on - strand, within PGA1_c02490 at 232.964 kb on - strand, within PGA1_c02490 at 232.964 kb on - strand, within PGA1_c02490 at 232.964 kb on - strand, within PGA1_c02490 at 232.964 kb on - strand, within PGA1_c02490 at 232.968 kb on + strand, within PGA1_c02490 at 232.976 kb on - strand, within PGA1_c02490 at 232.976 kb on - strand, within PGA1_c02490 at 232.976 kb on - strand, within PGA1_c02490 at 232.976 kb on - strand, within PGA1_c02490 at 233.046 kb on + strand, within PGA1_c02490 at 233.047 kb on - strand, within PGA1_c02490 at 233.054 kb on - strand, within PGA1_c02490 at 233.054 kb on - strand, within PGA1_c02490 at 233.054 kb on - strand, within PGA1_c02490 at 233.070 kb on - strand, within PGA1_c02490 at 233.078 kb on - strand, within PGA1_c02490 at 233.093 kb on - strand, within PGA1_c02490 at 233.139 kb on - strand, within PGA1_c02490 at 233.186 kb on - strand, within PGA1_c02490 at 233.192 kb on + strand, within PGA1_c02490 at 233.196 kb on + strand, within PGA1_c02490 at 233.228 kb on + strand, within PGA1_c02490 at 233.235 kb on - strand, within PGA1_c02490 at 233.235 kb on - strand, within PGA1_c02490 at 233.242 kb on - strand, within PGA1_c02490 at 233.244 kb on + strand, within PGA1_c02490 at 233.325 kb on + strand, within PGA1_c02490 at 233.353 kb on + strand, within PGA1_c02490 at 233.426 kb on + strand, within PGA1_c02490 at 233.459 kb on - strand, within PGA1_c02490 at 233.495 kb on - strand, within PGA1_c02490 at 233.572 kb on + strand, within PGA1_c02490 at 233.603 kb on - strand, within PGA1_c02490 at 233.634 kb on + strand at 233.634 kb on + strand at 233.634 kb on + strand at 233.634 kb on + strand at 233.642 kb on - strand at 233.642 kb on - strand at 233.669 kb on - strand at 233.681 kb on + strand at 233.732 kb on + strand at 233.732 kb on + strand at 233.732 kb on + strand at 233.732 kb on + strand at 233.732 kb on + strand at 233.732 kb on + strand at 233.732 kb on + strand at 233.740 kb on - strand at 233.740 kb on - strand at 233.740 kb on - strand at 233.740 kb on - strand at 233.761 kb on - strand at 233.795 kb on + strand at 233.812 kb on - strand at 233.911 kb on + strand, within PGA1_c02500 at 234.014 kb on - strand, within PGA1_c02500 at 234.019 kb on + strand, within PGA1_c02500 at 234.034 kb on - strand, within PGA1_c02500 at 234.133 kb on + strand, within PGA1_c02500 at 234.146 kb on - strand, within PGA1_c02500 at 234.237 kb on + strand, within PGA1_c02500 at 234.245 kb on - strand, within PGA1_c02500 at 234.245 kb on - strand, within PGA1_c02500 at 234.255 kb on - strand, within PGA1_c02500 at 234.266 kb on + strand, within PGA1_c02500 at 234.271 kb on + strand, within PGA1_c02500 at 234.304 kb on + strand, within PGA1_c02500 at 234.423 kb on + strand at 234.484 kb on - strand at 234.590 kb on + strand at 234.600 kb on - strand at 234.662 kb on + strand at 234.695 kb on + strand at 234.695 kb on + strand at 234.703 kb on - strand at 234.703 kb on - strand at 234.703 kb on - strand at 234.734 kb on + strand, within PGA1_c02510 at 234.742 kb on - strand, within PGA1_c02510 at 234.742 kb on - strand, within PGA1_c02510 at 234.742 kb on - strand, within PGA1_c02510 at 234.759 kb on - strand, within PGA1_c02510 at 234.764 kb on - strand, within PGA1_c02510
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 231,346 + PGA1_c02480 0.30 +1.0 231,346 + PGA1_c02480 0.30 -1.1 231,346 + PGA1_c02480 0.30 +2.1 231,346 + PGA1_c02480 0.30 -0.3 231,346 + PGA1_c02480 0.30 -0.7 231,354 - PGA1_c02480 0.30 +0.4 231,378 + PGA1_c02480 0.32 -0.2 231,378 + PGA1_c02480 0.32 -1.1 231,414 + PGA1_c02480 0.35 +1.0 231,422 - PGA1_c02480 0.35 -0.1 231,422 - PGA1_c02480 0.35 +0.6 231,443 + PGA1_c02480 0.37 +1.8 231,484 + PGA1_c02480 0.40 -1.9 231,497 + PGA1_c02480 0.41 +1.1 231,502 + PGA1_c02480 0.41 +0.2 231,502 + PGA1_c02480 0.41 -0.4 231,543 + PGA1_c02480 0.44 +0.7 231,584 + PGA1_c02480 0.47 +1.5 231,586 - PGA1_c02480 0.48 +0.9 231,608 + PGA1_c02480 0.49 +0.5 231,615 - PGA1_c02480 0.50 +1.8 231,616 - PGA1_c02480 0.50 -0.8 231,618 - PGA1_c02480 0.50 -0.1 231,623 - PGA1_c02480 0.50 -0.1 231,660 + PGA1_c02480 0.53 +0.0 231,722 - PGA1_c02480 0.58 +0.2 231,742 + PGA1_c02480 0.59 -0.2 231,744 + PGA1_c02480 0.59 -0.1 231,811 + PGA1_c02480 0.64 -0.5 231,811 + PGA1_c02480 0.64 +0.4 231,811 + PGA1_c02480 0.64 +0.1 231,811 + PGA1_c02480 0.64 -0.3 231,811 + PGA1_c02480 0.64 +0.9 231,811 + PGA1_c02480 0.64 -0.0 231,811 + PGA1_c02480 0.64 +0.0 231,811 + PGA1_c02480 0.64 +1.7 231,811 + PGA1_c02480 0.64 -3.0 231,811 + PGA1_c02480 0.64 -0.1 231,819 - PGA1_c02480 0.65 -0.9 231,819 - PGA1_c02480 0.65 +0.4 231,819 - PGA1_c02480 0.65 +0.7 231,819 - PGA1_c02480 0.65 +0.5 231,819 - PGA1_c02480 0.65 -0.2 231,819 - PGA1_c02480 0.65 +0.7 231,819 - PGA1_c02480 0.65 -0.3 231,819 - PGA1_c02480 0.65 -0.3 231,819 - PGA1_c02480 0.65 -1.0 231,819 - PGA1_c02480 0.65 -1.8 231,819 - PGA1_c02480 0.65 -0.7 231,819 - PGA1_c02480 0.65 +1.6 231,819 - PGA1_c02480 0.65 -1.7 231,819 - PGA1_c02480 0.65 -1.1 231,819 - PGA1_c02480 0.65 +1.1 231,819 - PGA1_c02480 0.65 +0.1 231,819 - PGA1_c02480 0.65 -0.2 231,819 - PGA1_c02480 0.65 +0.4 231,860 + PGA1_c02480 0.68 -0.1 231,878 - PGA1_c02480 0.69 +3.1 231,912 + PGA1_c02480 0.72 +1.0 231,919 - PGA1_c02480 0.72 +0.7 231,946 + PGA1_c02480 0.75 +1.3 231,977 + PGA1_c02480 0.77 +0.9 231,977 + PGA1_c02480 0.77 -1.5 231,977 + PGA1_c02480 0.77 +1.0 231,985 - PGA1_c02480 0.77 +1.6 231,985 - PGA1_c02480 0.77 +0.4 232,031 + PGA1_c02480 0.81 -0.9 232,031 + PGA1_c02480 0.81 -0.1 232,041 - PGA1_c02480 0.82 -2.2 232,073 + PGA1_c02480 0.84 -0.0 232,073 + PGA1_c02480 0.84 +0.8 232,073 + PGA1_c02480 0.84 +0.7 232,126 + PGA1_c02480 0.88 +0.4 232,134 - PGA1_c02480 0.89 -0.5 232,134 - PGA1_c02480 0.89 +0.1 232,134 - PGA1_c02480 0.89 -0.2 232,134 - PGA1_c02480 0.89 -0.6 232,134 - PGA1_c02480 0.89 +1.2 232,166 + -0.0 232,172 + +0.9 232,172 + +0.7 232,256 + -3.3 232,256 + -0.3 232,282 + -0.9 232,318 + -1.3 232,326 - +1.0 232,343 - -0.1 232,392 + -1.8 232,400 - +0.5 232,405 - -2.4 232,416 + +0.6 232,416 - +0.2 232,441 + +0.7 232,518 + PGA1_c02490 0.15 -1.5 232,536 - PGA1_c02490 0.16 -0.3 232,537 + PGA1_c02490 0.16 +0.1 232,537 + PGA1_c02490 0.16 -0.6 232,545 - PGA1_c02490 0.16 -0.8 232,614 - PGA1_c02490 0.21 -0.6 232,680 + PGA1_c02490 0.25 +0.2 232,685 + PGA1_c02490 0.26 +0.1 232,693 - PGA1_c02490 0.26 +0.0 232,693 - PGA1_c02490 0.26 +0.2 232,693 - PGA1_c02490 0.26 +0.1 232,704 - PGA1_c02490 0.27 +0.0 232,753 - PGA1_c02490 0.30 +1.3 232,754 + PGA1_c02490 0.30 +0.1 232,814 - PGA1_c02490 0.35 -0.9 232,850 + PGA1_c02490 0.37 +0.7 232,944 - PGA1_c02490 0.43 -0.6 232,946 + PGA1_c02490 0.43 +0.2 232,946 + PGA1_c02490 0.43 +0.8 232,946 + PGA1_c02490 0.43 +1.1 232,954 - PGA1_c02490 0.44 -0.2 232,954 - PGA1_c02490 0.44 +0.9 232,956 + PGA1_c02490 0.44 +0.3 232,956 + PGA1_c02490 0.44 +0.7 232,956 + PGA1_c02490 0.44 +0.4 232,956 + PGA1_c02490 0.44 +1.2 232,964 - PGA1_c02490 0.45 +0.3 232,964 - PGA1_c02490 0.45 -0.3 232,964 - PGA1_c02490 0.45 -0.0 232,964 - PGA1_c02490 0.45 -0.1 232,964 - PGA1_c02490 0.45 +1.1 232,964 - PGA1_c02490 0.45 -0.2 232,964 - PGA1_c02490 0.45 +1.0 232,964 - PGA1_c02490 0.45 -0.3 232,964 - PGA1_c02490 0.45 -0.1 232,968 + PGA1_c02490 0.45 +0.3 232,976 - PGA1_c02490 0.46 +0.7 232,976 - PGA1_c02490 0.46 -2.0 232,976 - PGA1_c02490 0.46 +0.9 232,976 - PGA1_c02490 0.46 -1.2 233,046 + PGA1_c02490 0.50 -0.3 233,047 - PGA1_c02490 0.50 +0.7 233,054 - PGA1_c02490 0.51 -1.1 233,054 - PGA1_c02490 0.51 -2.8 233,054 - PGA1_c02490 0.51 -0.8 233,070 - PGA1_c02490 0.52 -0.6 233,078 - PGA1_c02490 0.52 +0.9 233,093 - PGA1_c02490 0.53 -0.1 233,139 - PGA1_c02490 0.57 -1.0 233,186 - PGA1_c02490 0.60 -0.5 233,192 + PGA1_c02490 0.60 -1.9 233,196 + PGA1_c02490 0.60 -0.3 233,228 + PGA1_c02490 0.63 -0.3 233,235 - PGA1_c02490 0.63 -0.2 233,235 - PGA1_c02490 0.63 +0.3 233,242 - PGA1_c02490 0.63 +0.2 233,244 + PGA1_c02490 0.64 +0.1 233,325 + PGA1_c02490 0.69 +1.2 233,353 + PGA1_c02490 0.71 -0.0 233,426 + PGA1_c02490 0.76 -1.3 233,459 - PGA1_c02490 0.78 -2.5 233,495 - PGA1_c02490 0.81 +1.7 233,572 + PGA1_c02490 0.86 +0.6 233,603 - PGA1_c02490 0.88 +0.6 233,634 + -0.2 233,634 + +0.4 233,634 + +0.7 233,634 + -1.3 233,642 - +0.5 233,642 - -0.7 233,669 - +0.7 233,681 + -0.0 233,732 + -0.3 233,732 + +1.9 233,732 + -0.9 233,732 + -0.8 233,732 + -0.3 233,732 + +1.1 233,732 + +1.5 233,740 - +1.3 233,740 - -0.3 233,740 - +0.6 233,740 - -0.9 233,761 - +0.1 233,795 + +0.2 233,812 - -0.9 233,911 + PGA1_c02500 0.18 -0.3 234,014 - PGA1_c02500 0.34 -0.6 234,019 + PGA1_c02500 0.35 +0.7 234,034 - PGA1_c02500 0.37 +0.7 234,133 + PGA1_c02500 0.52 -2.3 234,146 - PGA1_c02500 0.54 -1.8 234,237 + PGA1_c02500 0.67 +1.1 234,245 - PGA1_c02500 0.68 +0.1 234,245 - PGA1_c02500 0.68 -0.8 234,255 - PGA1_c02500 0.70 +0.0 234,266 + PGA1_c02500 0.72 -0.4 234,271 + PGA1_c02500 0.72 -0.2 234,304 + PGA1_c02500 0.77 -0.9 234,423 + -0.3 234,484 - -0.9 234,590 + -0.7 234,600 - +0.7 234,662 + -1.3 234,695 + +0.2 234,695 + -1.3 234,703 - -1.5 234,703 - +0.7 234,703 - +0.1 234,734 + PGA1_c02510 0.10 -1.0 234,742 - PGA1_c02510 0.11 +0.9 234,742 - PGA1_c02510 0.11 +0.1 234,742 - PGA1_c02510 0.11 -0.3 234,759 - PGA1_c02510 0.13 +0.4 234,764 - PGA1_c02510 0.13 -0.1
Or see this region's nucleotide sequence