Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23280

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
2,415,195	+				+0.9
2,415,241	-				+0.5
2,415,248	-				-0.1
2,415,273	+		PGA1_c23270	0.11	+0.1
2,415,273	+		PGA1_c23270	0.11	-2.9
2,415,302	+		PGA1_c23270	0.14	+0.7
2,415,371	-		PGA1_c23270	0.21	+0.5
2,415,411	+		PGA1_c23270	0.25	-1.3
2,415,419	+		PGA1_c23270	0.26	-0.1
2,415,443	+		PGA1_c23270	0.28	+0.1
2,415,443	+		PGA1_c23270	0.28	+0.6
2,415,520	+		PGA1_c23270	0.35	-0.5
2,415,558	-		PGA1_c23270	0.39	+0.0
2,415,558	-		PGA1_c23270	0.39	-0.6
2,415,558	-		PGA1_c23270	0.39	+0.1
2,415,563	-		PGA1_c23270	0.40	-0.2
2,415,587	+		PGA1_c23270	0.42	-0.1
2,415,611	+		PGA1_c23270	0.44	+0.9
2,415,618	-		PGA1_c23270	0.45	+1.2
2,415,664	-		PGA1_c23270	0.49	-0.7
2,415,803	-		PGA1_c23270	0.63	+1.1
2,415,835	+		PGA1_c23270	0.66	-0.8
2,415,896	+		PGA1_c23270	0.72	+0.1
2,415,970	+		PGA1_c23270	0.79	+0.5
2,415,977	-		PGA1_c23270	0.80	-0.9
2,415,978	-		PGA1_c23270	0.80	+0.5
2,416,014	+		PGA1_c23270	0.83	-0.6
2,416,014	+		PGA1_c23270	0.83	-0.7
2,416,019	+		PGA1_c23270	0.84	+1.3
2,416,022	-		PGA1_c23270	0.84	-1.5
2,416,024	-		PGA1_c23270	0.84	+1.5
2,416,027	-		PGA1_c23270	0.84	+1.3
2,416,057	+		PGA1_c23270	0.87	-0.8
2,416,060	-		PGA1_c23270	0.88	-1.1
2,416,062	+		PGA1_c23270	0.88	-1.2
2,416,062	+		PGA1_c23270	0.88	-0.3
2,416,143	-				+0.3
2,416,179	+				+0.5
2,416,196	+				-1.6
2,416,208	+				+0.9
2,416,225	+				+0.3
2,416,255	+				-0.8
2,416,261	+				+0.1
2,416,269	-				-0.5
2,416,269	-				-0.6
2,416,269	-				+0.5
2,416,271	+				-1.9
2,416,271	+				+0.2
2,416,343	-				+0.0
2,416,343	-				-0.5
2,416,343	-				+0.5
2,416,350	+				-1.0
2,416,646	+		PGA1_c23280	0.23	-2.3
2,416,647	-		PGA1_c23280	0.23	-1.1
2,416,674	+		PGA1_c23280	0.25	+0.5
2,416,709	+		PGA1_c23280	0.26	+0.9
2,416,709	+		PGA1_c23280	0.26	-0.8
2,416,735	-		PGA1_c23280	0.28	-1.3
2,416,746	+		PGA1_c23280	0.28	+0.5
2,416,752	+		PGA1_c23280	0.28	+0.5
2,416,760	-		PGA1_c23280	0.29	+2.0
2,416,774	-		PGA1_c23280	0.30	+0.9
2,416,790	-		PGA1_c23280	0.30	+0.7
2,416,812	+		PGA1_c23280	0.31	+1.3
2,416,822	-		PGA1_c23280	0.32	-0.1
2,416,827	-		PGA1_c23280	0.32	-1.1
2,416,841	+		PGA1_c23280	0.33	-1.1
2,416,856	-		PGA1_c23280	0.34	+0.2
2,416,864	+		PGA1_c23280	0.34	+0.3
2,416,906	-		PGA1_c23280	0.36	-0.8
2,416,938	+		PGA1_c23280	0.38	-2.0
2,416,942	+		PGA1_c23280	0.38	-0.1
2,416,950	-		PGA1_c23280	0.38	+0.3
2,416,979	-		PGA1_c23280	0.40	-1.0
2,417,080	+		PGA1_c23280	0.45	-0.3
2,417,080	+		PGA1_c23280	0.45	-0.1
2,417,080	+		PGA1_c23280	0.45	-1.1
2,417,159	-		PGA1_c23280	0.49	+0.9
2,417,178	+		PGA1_c23280	0.50	-0.5
2,417,178	+		PGA1_c23280	0.50	-1.3
2,417,183	+		PGA1_c23280	0.50	-0.9
2,417,186	-		PGA1_c23280	0.50	-0.5
2,417,186	-		PGA1_c23280	0.50	+0.2
2,417,248	+		PGA1_c23280	0.53	-0.2
2,417,256	+		PGA1_c23280	0.54	-0.3
2,417,256	+		PGA1_c23280	0.54	+0.5
2,417,264	-		PGA1_c23280	0.54	+0.1
2,417,284	+		PGA1_c23280	0.55	-0.1
2,417,284	-		PGA1_c23280	0.55	-0.1
2,417,292	-		PGA1_c23280	0.55	+1.4
2,417,330	-		PGA1_c23280	0.57	-1.1
2,417,336	+		PGA1_c23280	0.58	+0.8
2,417,339	-		PGA1_c23280	0.58	-0.2
2,417,340	-		PGA1_c23280	0.58	-0.8
2,417,368	+		PGA1_c23280	0.59	-1.3
2,417,410	+		PGA1_c23280	0.61	+0.1
2,417,410	+		PGA1_c23280	0.61	-0.5
2,417,418	-		PGA1_c23280	0.62	-0.8
2,417,426	-		PGA1_c23280	0.62	+0.7
2,417,477	+		PGA1_c23280	0.65	-0.3
2,417,477	+		PGA1_c23280	0.65	-2.8
2,417,477	+		PGA1_c23280	0.65	-1.1
2,417,477	+		PGA1_c23280	0.65	-0.7
2,417,477	+		PGA1_c23280	0.65	+1.0
2,417,477	+		PGA1_c23280	0.65	-1.2
2,417,477	+		PGA1_c23280	0.65	-1.0
2,417,477	+		PGA1_c23280	0.65	-0.2
2,417,479	-		PGA1_c23280	0.65	-0.6
2,417,485	-		PGA1_c23280	0.65	-3.1
2,417,485	-		PGA1_c23280	0.65	-0.5
2,417,485	-		PGA1_c23280	0.65	+0.0
2,417,485	-		PGA1_c23280	0.65	-2.1
2,417,485	-		PGA1_c23280	0.65	-1.3
2,417,485	-		PGA1_c23280	0.65	-1.1
2,417,485	-		PGA1_c23280	0.65	+1.6
2,417,485	-		PGA1_c23280	0.65	-0.3
2,417,554	+		PGA1_c23280	0.69	-1.3
2,417,562	-		PGA1_c23280	0.69	-0.3
2,417,590	+		PGA1_c23280	0.70	-0.7
2,417,602	+		PGA1_c23280	0.71	-0.3
2,417,602	+		PGA1_c23280	0.71	-0.3
2,417,610	-		PGA1_c23280	0.71	+1.9
2,417,610	-		PGA1_c23280	0.71	+0.5
2,417,696	-		PGA1_c23280	0.76	-0.5
2,417,718	+		PGA1_c23280	0.77	+0.7
2,417,718	+				-1.1
2,417,726	-		PGA1_c23280	0.77	-0.6
2,417,726	-		PGA1_c23280	0.77	+0.2
2,417,726	-		PGA1_c23280	0.77	+0.5
2,417,726	-		PGA1_c23280	0.77	-0.1
2,417,746	-		PGA1_c23280	0.78	-1.6
2,417,765	+		PGA1_c23280	0.79	+1.1
2,417,765	+		PGA1_c23280	0.79	+0.5
2,417,773	-		PGA1_c23280	0.80	+0.2
2,417,816	+		PGA1_c23280	0.82	+0.4
2,417,824	-		PGA1_c23280	0.82	+2.5
2,417,824	-		PGA1_c23280	0.82	-0.8
2,417,824	-		PGA1_c23280	0.82	+4.0
2,417,828	+		PGA1_c23280	0.82	+0.4
2,417,836	-		PGA1_c23280	0.83	-1.2
2,417,836	-		PGA1_c23280	0.83	+1.0
2,417,836	-		PGA1_c23280	0.83	-0.5
2,417,886	+		PGA1_c23280	0.85	-1.5
2,417,892	+		PGA1_c23280	0.86	-0.8
2,417,959	+		PGA1_c23280	0.89	-0.5
2,417,971	+		PGA1_c23280	0.90	-0.6
2,417,982	+				-0.1
2,418,039	-				+0.5
2,418,061	-				+0.8
2,418,218	+				-0.2
2,418,238	+				-1.5
2,418,243	+				-0.9
2,418,263	+				-1.8
2,418,268	-				-0.0
2,418,323	+		PGA1_c23290	0.16	+0.4
2,418,331	-		PGA1_c23290	0.17	-1.8
2,418,331	-		PGA1_c23290	0.17	+0.8
2,418,331	-		PGA1_c23290	0.17	+1.2
2,418,372	-		PGA1_c23290	0.22	-0.3
2,418,395	+		PGA1_c23290	0.24	+0.4
2,418,413	+		PGA1_c23290	0.26	+0.5
2,418,413	+		PGA1_c23290	0.26	+0.7
2,418,420	-		PGA1_c23290	0.27	+0.9
2,418,437	-		PGA1_c23290	0.29	+0.0
2,418,456	+		PGA1_c23290	0.31	+0.3
2,418,571	+		PGA1_c23290	0.44	-0.5
2,418,758	-		PGA1_c23290	0.65	-2.8
2,418,758	-		PGA1_c23290	0.65	-0.1
2,418,758	-		PGA1_c23290	0.65	-0.3
2,418,758	-		PGA1_c23290	0.65	-0.8
2,418,758	-		PGA1_c23290	0.65	-1.8
2,418,758	-		PGA1_c23290	0.65	+0.5
2,418,770	+		PGA1_c23290	0.67	+0.6
2,418,778	-		PGA1_c23290	0.68	+0.4
2,418,802	+		PGA1_c23290	0.70	+0.1
2,418,861	-		PGA1_c23290	0.77	+1.4
2,418,884	+		PGA1_c23290	0.80	+0.2
2,418,884	+		PGA1_c23290	0.80	-0.1
2,418,892	-		PGA1_c23290	0.80	-0.1
2,418,892	-		PGA1_c23290	0.80	-0.5
2,418,892	-		PGA1_c23290	0.80	-1.5
2,418,892	-		PGA1_c23290	0.80	+0.4
2,418,917	+		PGA1_c23290	0.83	+0.5
2,419,037	+				-0.1
2,419,064	+				+0.5
2,419,064	+				-1.1
2,419,067	-				-0.1
2,419,073	+				-0.6
2,419,073	+				-0.5
2,419,083	+				-1.2
2,419,130	+				-0.5
2,419,138	-				+0.5
2,419,139	+				+0.1
2,419,147	-				+0.7
2,419,172	-				-1.0