Strain Fitness in Marinobacter adhaerens HP15 around HP15_2153

Experiment: D-Trehalose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2152 and HP15_2153 are separated by 329 nucleotidesHP15_2153 and HP15_2154 are separated by 23 nucleotides HP15_2152: HP15_2152 - membrane-associated lipoprotein involved in thiamine biosynthesis, at 2,256,779 to 2,257,744 _2152 HP15_2153: HP15_2153 - extracellular ligand-binding receptor, at 2,258,074 to 2,259,323 _2153 HP15_2154: HP15_2154 - NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, at 2,259,347 to 2,260,978 _2154 Position (kb) 2258 2259 2260Strain fitness (log2 ratio) -2 -1 0 1 2at 2257.242 kb on + strand, within HP15_2152at 2257.247 kb on + strand, within HP15_2152at 2257.265 kb on - strand, within HP15_2152at 2257.268 kb on - strand, within HP15_2152at 2257.414 kb on - strand, within HP15_2152at 2257.418 kb on + strand, within HP15_2152at 2257.504 kb on + strand, within HP15_2152at 2257.704 kb on - strandat 2257.783 kb on + strandat 2257.829 kb on + strandat 2257.903 kb on + strandat 2258.123 kb on + strandat 2258.126 kb on + strandat 2258.188 kb on + strandat 2258.312 kb on - strand, within HP15_2153at 2258.369 kb on - strand, within HP15_2153at 2258.524 kb on - strand, within HP15_2153at 2258.531 kb on + strand, within HP15_2153at 2258.535 kb on + strand, within HP15_2153at 2258.605 kb on + strand, within HP15_2153at 2258.960 kb on + strand, within HP15_2153at 2258.996 kb on - strand, within HP15_2153at 2259.085 kb on - strand, within HP15_2153at 2259.166 kb on - strand, within HP15_2153at 2259.353 kb on - strandat 2259.447 kb on + strandat 2259.471 kb on - strandat 2259.505 kb on + strandat 2259.540 kb on + strand, within HP15_2154at 2259.558 kb on + strand, within HP15_2154at 2259.560 kb on - strand, within HP15_2154at 2259.572 kb on + strand, within HP15_2154at 2259.607 kb on + strand, within HP15_2154at 2259.638 kb on - strand, within HP15_2154at 2259.759 kb on + strand, within HP15_2154at 2259.900 kb on + strand, within HP15_2154at 2259.924 kb on + strand, within HP15_2154at 2260.011 kb on + strand, within HP15_2154at 2260.228 kb on + strand, within HP15_2154at 2260.247 kb on - strand, within HP15_2154at 2260.247 kb on - strand, within HP15_2154

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose
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2,257,242 + HP15_2152 0.48 -0.5
2,257,247 + HP15_2152 0.48 -1.3
2,257,265 - HP15_2152 0.50 -0.8
2,257,268 - HP15_2152 0.51 +1.3
2,257,414 - HP15_2152 0.66 +0.7
2,257,418 + HP15_2152 0.66 +1.9
2,257,504 + HP15_2152 0.75 -0.3
2,257,704 - +2.3
2,257,783 + +0.9
2,257,829 + +0.9
2,257,903 + -2.3
2,258,123 + -0.8
2,258,126 + -1.3
2,258,188 + -0.3
2,258,312 - HP15_2153 0.19 -0.5
2,258,369 - HP15_2153 0.24 -1.1
2,258,524 - HP15_2153 0.36 -0.4
2,258,531 + HP15_2153 0.37 +0.2
2,258,535 + HP15_2153 0.37 -1.3
2,258,605 + HP15_2153 0.42 +1.1
2,258,960 + HP15_2153 0.71 +0.1
2,258,996 - HP15_2153 0.74 -0.6
2,259,085 - HP15_2153 0.81 -1.9
2,259,166 - HP15_2153 0.87 +0.3
2,259,353 - -0.2
2,259,447 + -0.6
2,259,471 - +1.9
2,259,505 + -1.1
2,259,540 + HP15_2154 0.12 -1.0
2,259,558 + HP15_2154 0.13 -0.9
2,259,560 - HP15_2154 0.13 -0.1
2,259,572 + HP15_2154 0.14 +1.4
2,259,607 + HP15_2154 0.16 -0.1
2,259,638 - HP15_2154 0.18 +0.1
2,259,759 + HP15_2154 0.25 +1.9
2,259,900 + HP15_2154 0.34 -0.6
2,259,924 + HP15_2154 0.35 -0.5
2,260,011 + HP15_2154 0.41 +0.4
2,260,228 + HP15_2154 0.54 +0.1
2,260,247 - HP15_2154 0.55 -0.3
2,260,247 - HP15_2154 0.55 -0.3

Or see this region's nucleotide sequence