Experiment: D-Trehalose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2152 and HP15_2153 are separated by 329 nucleotides HP15_2153 and HP15_2154 are separated by 23 nucleotides
HP15_2152: HP15_2152 - membrane-associated lipoprotein involved in thiamine biosynthesis, at 2,256,779 to 2,257,744
_2152
HP15_2153: HP15_2153 - extracellular ligand-binding receptor, at 2,258,074 to 2,259,323
_2153
HP15_2154: HP15_2154 - NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, at 2,259,347 to 2,260,978
_2154
Position (kb)
2258
2259
2260 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2257.242 kb on + strand, within HP15_2152 at 2257.247 kb on + strand, within HP15_2152 at 2257.265 kb on - strand, within HP15_2152 at 2257.268 kb on - strand, within HP15_2152 at 2257.414 kb on - strand, within HP15_2152 at 2257.418 kb on + strand, within HP15_2152 at 2257.504 kb on + strand, within HP15_2152 at 2257.704 kb on - strand at 2257.783 kb on + strand at 2257.829 kb on + strand at 2257.903 kb on + strand at 2258.123 kb on + strand at 2258.126 kb on + strand at 2258.188 kb on + strand at 2258.312 kb on - strand, within HP15_2153 at 2258.369 kb on - strand, within HP15_2153 at 2258.524 kb on - strand, within HP15_2153 at 2258.531 kb on + strand, within HP15_2153 at 2258.535 kb on + strand, within HP15_2153 at 2258.605 kb on + strand, within HP15_2153 at 2258.960 kb on + strand, within HP15_2153 at 2258.996 kb on - strand, within HP15_2153 at 2259.085 kb on - strand, within HP15_2153 at 2259.166 kb on - strand, within HP15_2153 at 2259.353 kb on - strand at 2259.447 kb on + strand at 2259.471 kb on - strand at 2259.505 kb on + strand at 2259.540 kb on + strand, within HP15_2154 at 2259.558 kb on + strand, within HP15_2154 at 2259.560 kb on - strand, within HP15_2154 at 2259.572 kb on + strand, within HP15_2154 at 2259.607 kb on + strand, within HP15_2154 at 2259.638 kb on - strand, within HP15_2154 at 2259.759 kb on + strand, within HP15_2154 at 2259.900 kb on + strand, within HP15_2154 at 2259.924 kb on + strand, within HP15_2154 at 2260.011 kb on + strand, within HP15_2154 at 2260.228 kb on + strand, within HP15_2154 at 2260.247 kb on - strand, within HP15_2154 at 2260.247 kb on - strand, within HP15_2154
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose remove 2,257,242 + HP15_2152 0.48 -0.5 2,257,247 + HP15_2152 0.48 -1.3 2,257,265 - HP15_2152 0.50 -0.8 2,257,268 - HP15_2152 0.51 +1.3 2,257,414 - HP15_2152 0.66 +0.7 2,257,418 + HP15_2152 0.66 +1.9 2,257,504 + HP15_2152 0.75 -0.3 2,257,704 - +2.3 2,257,783 + +0.9 2,257,829 + +0.9 2,257,903 + -2.3 2,258,123 + -0.8 2,258,126 + -1.3 2,258,188 + -0.3 2,258,312 - HP15_2153 0.19 -0.5 2,258,369 - HP15_2153 0.24 -1.1 2,258,524 - HP15_2153 0.36 -0.4 2,258,531 + HP15_2153 0.37 +0.2 2,258,535 + HP15_2153 0.37 -1.3 2,258,605 + HP15_2153 0.42 +1.1 2,258,960 + HP15_2153 0.71 +0.1 2,258,996 - HP15_2153 0.74 -0.6 2,259,085 - HP15_2153 0.81 -1.9 2,259,166 - HP15_2153 0.87 +0.3 2,259,353 - -0.2 2,259,447 + -0.6 2,259,471 - +1.9 2,259,505 + -1.1 2,259,540 + HP15_2154 0.12 -1.0 2,259,558 + HP15_2154 0.13 -0.9 2,259,560 - HP15_2154 0.13 -0.1 2,259,572 + HP15_2154 0.14 +1.4 2,259,607 + HP15_2154 0.16 -0.1 2,259,638 - HP15_2154 0.18 +0.1 2,259,759 + HP15_2154 0.25 +1.9 2,259,900 + HP15_2154 0.34 -0.6 2,259,924 + HP15_2154 0.35 -0.5 2,260,011 + HP15_2154 0.41 +0.4 2,260,228 + HP15_2154 0.54 +0.1 2,260,247 - HP15_2154 0.55 -0.3 2,260,247 - HP15_2154 0.55 -0.3
Or see this region's nucleotide sequence