Experiment: D-Trehalose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1901 and HP15_1902 are separated by 57 nucleotides HP15_1902 and HP15_1903 are separated by 56 nucleotides HP15_1903 and HP15_1904 overlap by 1 nucleotides
HP15_1901: HP15_1901 - SAF domain protein, at 2,010,512 to 2,011,798
_1901
HP15_1902: HP15_1902 - glucose-1-phosphate cytidylyltransferase, at 2,011,856 to 2,012,608
_1902
HP15_1903: HP15_1903 - N-acetylglucosaminyl phosphatidylinositol deacetylase, at 2,012,665 to 2,013,273
_1903
HP15_1904: HP15_1904 - polysaccharide pyruvyl transferase, at 2,013,273 to 2,014,613
_1904
Position (kb)
2012
2013
2014 Strain fitness (log2 ratio)
-1
0
1
2 at 2011.670 kb on + strand at 2011.762 kb on + strand at 2011.812 kb on + strand at 2012.002 kb on - strand, within HP15_1902 at 2012.164 kb on - strand, within HP15_1902 at 2012.340 kb on - strand, within HP15_1902 at 2012.357 kb on - strand, within HP15_1902 at 2012.360 kb on - strand, within HP15_1902 at 2012.444 kb on + strand, within HP15_1902 at 2012.555 kb on - strand at 2012.614 kb on + strand at 2012.614 kb on + strand at 2012.622 kb on - strand at 2012.638 kb on + strand at 2012.653 kb on - strand at 2012.702 kb on + strand at 2012.736 kb on - strand, within HP15_1903 at 2012.738 kb on + strand, within HP15_1903 at 2012.751 kb on - strand, within HP15_1903 at 2012.753 kb on + strand, within HP15_1903 at 2012.839 kb on - strand, within HP15_1903 at 2012.918 kb on - strand, within HP15_1903 at 2013.058 kb on + strand, within HP15_1903 at 2013.140 kb on + strand, within HP15_1903 at 2013.175 kb on - strand, within HP15_1903 at 2013.220 kb on + strand at 2013.523 kb on - strand, within HP15_1904 at 2013.622 kb on - strand, within HP15_1904 at 2013.624 kb on + strand, within HP15_1904 at 2013.624 kb on + strand, within HP15_1904 at 2013.624 kb on + strand, within HP15_1904 at 2013.624 kb on + strand, within HP15_1904 at 2013.624 kb on + strand, within HP15_1904 at 2013.632 kb on - strand, within HP15_1904 at 2013.632 kb on - strand, within HP15_1904 at 2013.632 kb on - strand, within HP15_1904 at 2013.632 kb on - strand, within HP15_1904 at 2013.652 kb on + strand, within HP15_1904 at 2013.759 kb on + strand, within HP15_1904 at 2013.767 kb on - strand, within HP15_1904 at 2013.778 kb on - strand, within HP15_1904 at 2013.778 kb on - strand, within HP15_1904 at 2013.976 kb on + strand, within HP15_1904 at 2013.984 kb on - strand, within HP15_1904 at 2013.989 kb on - strand, within HP15_1904 at 2014.015 kb on + strand, within HP15_1904 at 2014.173 kb on + strand, within HP15_1904 at 2014.233 kb on + strand, within HP15_1904
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose remove 2,011,670 + +0.4 2,011,762 + -0.7 2,011,812 + -1.0 2,012,002 - HP15_1902 0.19 -0.0 2,012,164 - HP15_1902 0.41 -0.2 2,012,340 - HP15_1902 0.64 +0.2 2,012,357 - HP15_1902 0.67 -0.8 2,012,360 - HP15_1902 0.67 +1.1 2,012,444 + HP15_1902 0.78 -0.0 2,012,555 - +1.5 2,012,614 + +1.6 2,012,614 + -0.4 2,012,622 - -0.3 2,012,638 + -0.6 2,012,653 - +0.3 2,012,702 + -0.3 2,012,736 - HP15_1903 0.12 -1.0 2,012,738 + HP15_1903 0.12 +0.3 2,012,751 - HP15_1903 0.14 -0.1 2,012,753 + HP15_1903 0.14 +0.0 2,012,839 - HP15_1903 0.29 -1.0 2,012,918 - HP15_1903 0.42 -1.0 2,013,058 + HP15_1903 0.65 +0.3 2,013,140 + HP15_1903 0.78 -0.3 2,013,175 - HP15_1903 0.84 -0.5 2,013,220 + -0.2 2,013,523 - HP15_1904 0.19 +1.6 2,013,622 - HP15_1904 0.26 +0.7 2,013,624 + HP15_1904 0.26 -0.2 2,013,624 + HP15_1904 0.26 -1.1 2,013,624 + HP15_1904 0.26 -0.1 2,013,624 + HP15_1904 0.26 -0.8 2,013,624 + HP15_1904 0.26 +0.9 2,013,632 - HP15_1904 0.27 +0.9 2,013,632 - HP15_1904 0.27 -1.1 2,013,632 - HP15_1904 0.27 -1.0 2,013,632 - HP15_1904 0.27 +0.7 2,013,652 + HP15_1904 0.28 +2.3 2,013,759 + HP15_1904 0.36 +1.3 2,013,767 - HP15_1904 0.37 +1.1 2,013,778 - HP15_1904 0.38 -0.1 2,013,778 - HP15_1904 0.38 -1.1 2,013,976 + HP15_1904 0.52 +1.0 2,013,984 - HP15_1904 0.53 -0.3 2,013,989 - HP15_1904 0.53 +1.5 2,014,015 + HP15_1904 0.55 +1.5 2,014,173 + HP15_1904 0.67 +0.1 2,014,233 + HP15_1904 0.72 +0.7
Or see this region's nucleotide sequence