Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01820 and PGA1_c01830 are separated by 147 nucleotides PGA1_c01830 and PGA1_c01840 are separated by 593 nucleotides PGA1_c01840 and PGA1_c01850 are separated by 290 nucleotides PGA1_c01850 and PGA1_c01860 are separated by 110 nucleotides
PGA1_c01820: PGA1_c01820 - Predicted permeases, at 166,389 to 167,333
_c01820
PGA1_c01830: PGA1_c01830 - Uncharacterized conserved small protein, at 167,481 to 167,696
_c01830
PGA1_c01840: PGA1_c01840 - transmembrane ion channel-domain containing protein, at 168,290 to 168,802
_c01840
PGA1_c01850: PGA1_c01850 - 50S ribosomal protein L15, at 169,093 to 169,563
_c01850
PGA1_c01860: PGA1_c01860 - preprotein translocase SecY, at 169,674 to 171,038
_c01860
Position (kb) 168
169 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 167.301 kb on + strand at 167.301 kb on + strand at 167.301 kb on + strand at 167.301 kb on + strand at 167.301 kb on + strand at 167.301 kb on + strand at 167.309 kb on - strand at 167.309 kb on - strand at 167.309 kb on - strand at 167.309 kb on - strand at 167.319 kb on - strand at 167.353 kb on - strand at 167.366 kb on + strand at 167.366 kb on + strand at 167.471 kb on + strand at 167.487 kb on - strand at 167.528 kb on - strand, within PGA1_c01830 at 167.558 kb on + strand, within PGA1_c01830 at 167.593 kb on - strand, within PGA1_c01830 at 167.596 kb on + strand, within PGA1_c01830 at 167.623 kb on - strand, within PGA1_c01830 at 167.744 kb on + strand at 167.910 kb on + strand at 167.929 kb on + strand at 167.942 kb on - strand at 167.952 kb on + strand at 167.960 kb on - strand at 167.960 kb on - strand at 167.960 kb on - strand at 168.018 kb on - strand at 168.042 kb on + strand at 168.048 kb on + strand at 168.048 kb on + strand at 168.089 kb on - strand at 168.089 kb on - strand at 168.113 kb on + strand at 168.113 kb on + strand at 168.113 kb on + strand at 168.115 kb on + strand at 168.121 kb on - strand at 168.123 kb on - strand at 168.138 kb on - strand at 168.219 kb on + strand at 168.272 kb on + strand at 168.376 kb on - strand, within PGA1_c01840 at 168.430 kb on + strand, within PGA1_c01840 at 168.435 kb on + strand, within PGA1_c01840 at 168.435 kb on + strand, within PGA1_c01840 at 168.443 kb on - strand, within PGA1_c01840 at 168.452 kb on + strand, within PGA1_c01840 at 168.482 kb on + strand, within PGA1_c01840 at 168.482 kb on + strand, within PGA1_c01840 at 168.490 kb on - strand, within PGA1_c01840 at 168.491 kb on + strand, within PGA1_c01840 at 168.497 kb on + strand, within PGA1_c01840 at 168.499 kb on - strand, within PGA1_c01840 at 168.499 kb on - strand, within PGA1_c01840 at 168.505 kb on - strand, within PGA1_c01840 at 168.511 kb on + strand, within PGA1_c01840 at 168.519 kb on - strand, within PGA1_c01840 at 168.519 kb on - strand, within PGA1_c01840 at 168.543 kb on + strand, within PGA1_c01840 at 168.543 kb on + strand, within PGA1_c01840 at 168.548 kb on + strand, within PGA1_c01840 at 168.548 kb on - strand, within PGA1_c01840 at 168.551 kb on - strand, within PGA1_c01840 at 168.551 kb on - strand, within PGA1_c01840 at 168.551 kb on - strand, within PGA1_c01840 at 168.551 kb on - strand, within PGA1_c01840 at 168.607 kb on + strand, within PGA1_c01840 at 168.619 kb on + strand, within PGA1_c01840 at 168.626 kb on - strand, within PGA1_c01840 at 168.664 kb on + strand, within PGA1_c01840 at 168.664 kb on + strand, within PGA1_c01840 at 168.664 kb on + strand, within PGA1_c01840 at 168.664 kb on + strand, within PGA1_c01840 at 168.672 kb on - strand, within PGA1_c01840 at 168.672 kb on - strand, within PGA1_c01840 at 168.688 kb on + strand, within PGA1_c01840 at 168.708 kb on + strand, within PGA1_c01840 at 168.747 kb on - strand, within PGA1_c01840 at 168.747 kb on - strand, within PGA1_c01840 at 168.752 kb on - strand at 168.754 kb on + strand at 168.762 kb on - strand at 168.786 kb on - strand at 168.880 kb on + strand at 168.888 kb on - strand at 168.894 kb on + strand at 168.894 kb on + strand at 168.901 kb on - strand at 168.917 kb on + strand at 168.917 kb on + strand at 168.925 kb on - strand at 168.931 kb on + strand at 168.931 kb on + strand at 168.932 kb on - strand at 168.932 kb on - strand at 168.936 kb on + strand at 168.937 kb on - strand at 168.939 kb on + strand at 168.939 kb on - strand at 168.939 kb on - strand at 168.939 kb on - strand at 168.939 kb on - strand at 168.941 kb on + strand at 168.941 kb on + strand at 168.949 kb on - strand at 168.949 kb on - strand at 168.949 kb on - strand at 168.949 kb on - strand at 168.949 kb on - strand at 168.968 kb on - strand at 169.518 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 167,301 + -0.2 167,301 + +0.8 167,301 + -0.2 167,301 + +0.7 167,301 + -2.9 167,301 + -0.3 167,309 - +0.7 167,309 - +0.3 167,309 - -0.6 167,309 - -2.0 167,319 - +0.2 167,353 - +0.3 167,366 + -2.2 167,366 + -0.5 167,471 + -0.8 167,487 - -0.3 167,528 - PGA1_c01830 0.22 -0.8 167,558 + PGA1_c01830 0.36 +1.4 167,593 - PGA1_c01830 0.52 +1.4 167,596 + PGA1_c01830 0.53 -2.5 167,623 - PGA1_c01830 0.66 +0.8 167,744 + -0.9 167,910 + -2.7 167,929 + -0.8 167,942 - -0.2 167,952 + -0.2 167,960 - -2.2 167,960 - +0.9 167,960 - -0.9 168,018 - -0.6 168,042 + +0.2 168,048 + +0.5 168,048 + +0.1 168,089 - +0.2 168,089 - -1.8 168,113 + -0.0 168,113 + -0.5 168,113 + -0.8 168,115 + +1.0 168,121 - +0.5 168,123 - +1.5 168,138 - +0.1 168,219 + -0.9 168,272 + +0.0 168,376 - PGA1_c01840 0.17 +0.7 168,430 + PGA1_c01840 0.27 +1.1 168,435 + PGA1_c01840 0.28 -1.2 168,435 + PGA1_c01840 0.28 +0.7 168,443 - PGA1_c01840 0.30 -0.7 168,452 + PGA1_c01840 0.32 +0.1 168,482 + PGA1_c01840 0.37 -0.1 168,482 + PGA1_c01840 0.37 +1.2 168,490 - PGA1_c01840 0.39 +1.7 168,491 + PGA1_c01840 0.39 +0.3 168,497 + PGA1_c01840 0.40 +1.0 168,499 - PGA1_c01840 0.41 +0.1 168,499 - PGA1_c01840 0.41 +0.5 168,505 - PGA1_c01840 0.42 +0.2 168,511 + PGA1_c01840 0.43 -0.3 168,519 - PGA1_c01840 0.45 -0.3 168,519 - PGA1_c01840 0.45 +1.2 168,543 + PGA1_c01840 0.49 +0.5 168,543 + PGA1_c01840 0.49 +0.7 168,548 + PGA1_c01840 0.50 -0.6 168,548 - PGA1_c01840 0.50 +0.7 168,551 - PGA1_c01840 0.51 -0.4 168,551 - PGA1_c01840 0.51 -0.3 168,551 - PGA1_c01840 0.51 +0.4 168,551 - PGA1_c01840 0.51 +0.9 168,607 + PGA1_c01840 0.62 +0.4 168,619 + PGA1_c01840 0.64 +2.9 168,626 - PGA1_c01840 0.65 -0.8 168,664 + PGA1_c01840 0.73 +0.7 168,664 + PGA1_c01840 0.73 +0.8 168,664 + PGA1_c01840 0.73 +1.2 168,664 + PGA1_c01840 0.73 +0.3 168,672 - PGA1_c01840 0.74 -0.3 168,672 - PGA1_c01840 0.74 +2.0 168,688 + PGA1_c01840 0.78 +0.1 168,708 + PGA1_c01840 0.81 +1.0 168,747 - PGA1_c01840 0.89 +0.0 168,747 - PGA1_c01840 0.89 +0.2 168,752 - +0.4 168,754 + -1.1 168,762 - -1.5 168,786 - -1.5 168,880 + +0.0 168,888 - -0.3 168,894 + -0.3 168,894 + +0.5 168,901 - +0.5 168,917 + -2.9 168,917 + +2.4 168,925 - +0.4 168,931 + +1.1 168,931 + -0.7 168,932 - +0.1 168,932 - -0.3 168,936 + -0.3 168,937 - -0.1 168,939 + +1.2 168,939 - +0.3 168,939 - +0.7 168,939 - +0.1 168,939 - +0.4 168,941 + -0.9 168,941 + -0.8 168,949 - +0.0 168,949 - +1.0 168,949 - -0.3 168,949 - +0.7 168,949 - +0.9 168,968 - +0.1 169,518 + +0.9
Or see this region's nucleotide sequence