Experiment: D-Trehalose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1355 and HP15_1356 overlap by 4 nucleotides HP15_1356 and HP15_1357 are separated by 40 nucleotides HP15_1357 and HP15_1359 are separated by 68 nucleotides HP15_1359 and HP15_1358 overlap by 9 nucleotides
HP15_1355: HP15_1355 - cell division protein FtsH, at 1,424,465 to 1,426,378
_1355
HP15_1356: HP15_1356 - conserved hypothetical protein, at 1,426,375 to 1,426,623
_1356
HP15_1357: HP15_1357 - gamma-glutamyltranspeptidase periplasmic precursor, at 1,426,664 to 1,428,427
_1357
HP15_1359: HP15_1359 - hypothetical protein, at 1,428,496 to 1,428,720
_1359
HP15_1358: HP15_1358 - formyltetrahydrofolate deformylase, at 1,428,712 to 1,429,425
_1358
Position (kb)
1426
1427
1428
1429 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1425.667 kb on - strand, within HP15_1355 at 1425.667 kb on - strand, within HP15_1355 at 1425.672 kb on - strand, within HP15_1355 at 1425.692 kb on + strand, within HP15_1355 at 1425.836 kb on - strand, within HP15_1355 at 1425.909 kb on + strand, within HP15_1355 at 1425.975 kb on + strand, within HP15_1355 at 1425.980 kb on + strand, within HP15_1355 at 1425.993 kb on - strand, within HP15_1355 at 1426.421 kb on + strand, within HP15_1356 at 1426.469 kb on + strand, within HP15_1356 at 1426.469 kb on + strand, within HP15_1356 at 1426.477 kb on - strand, within HP15_1356 at 1426.524 kb on + strand, within HP15_1356 at 1426.532 kb on - strand, within HP15_1356 at 1426.534 kb on + strand, within HP15_1356 at 1426.534 kb on + strand, within HP15_1356 at 1426.547 kb on - strand, within HP15_1356 at 1427.089 kb on - strand, within HP15_1357 at 1427.181 kb on + strand, within HP15_1357 at 1427.189 kb on - strand, within HP15_1357 at 1427.195 kb on - strand, within HP15_1357 at 1427.208 kb on + strand, within HP15_1357 at 1427.216 kb on - strand, within HP15_1357 at 1427.236 kb on + strand, within HP15_1357 at 1427.244 kb on - strand, within HP15_1357 at 1427.287 kb on + strand, within HP15_1357 at 1427.287 kb on + strand, within HP15_1357 at 1427.397 kb on - strand, within HP15_1357 at 1427.406 kb on - strand, within HP15_1357 at 1427.414 kb on + strand, within HP15_1357 at 1427.525 kb on + strand, within HP15_1357 at 1427.609 kb on + strand, within HP15_1357 at 1427.745 kb on - strand, within HP15_1357 at 1427.814 kb on + strand, within HP15_1357 at 1427.831 kb on + strand, within HP15_1357 at 1427.871 kb on + strand, within HP15_1357 at 1427.911 kb on + strand, within HP15_1357 at 1427.913 kb on - strand, within HP15_1357 at 1428.151 kb on + strand, within HP15_1357 at 1428.493 kb on + strand at 1428.749 kb on + strand at 1428.749 kb on + strand at 1428.836 kb on - strand, within HP15_1358 at 1429.023 kb on - strand, within HP15_1358 at 1429.064 kb on + strand, within HP15_1358 at 1429.181 kb on + strand, within HP15_1358 at 1429.192 kb on + strand, within HP15_1358 at 1429.192 kb on + strand, within HP15_1358 at 1429.200 kb on - strand, within HP15_1358 at 1429.200 kb on - strand, within HP15_1358 at 1429.317 kb on + strand, within HP15_1358 at 1429.334 kb on - strand, within HP15_1358 at 1429.334 kb on - strand, within HP15_1358 at 1429.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose remove 1,425,667 - HP15_1355 0.63 +1.7 1,425,667 - HP15_1355 0.63 +1.5 1,425,672 - HP15_1355 0.63 -0.4 1,425,692 + HP15_1355 0.64 +1.6 1,425,836 - HP15_1355 0.72 +0.3 1,425,909 + HP15_1355 0.75 +0.2 1,425,975 + HP15_1355 0.79 -0.2 1,425,980 + HP15_1355 0.79 -0.1 1,425,993 - HP15_1355 0.80 +0.1 1,426,421 + HP15_1356 0.18 -0.5 1,426,469 + HP15_1356 0.38 -1.1 1,426,469 + HP15_1356 0.38 -1.1 1,426,477 - HP15_1356 0.41 -1.0 1,426,524 + HP15_1356 0.60 -0.1 1,426,532 - HP15_1356 0.63 +0.3 1,426,534 + HP15_1356 0.64 +2.1 1,426,534 + HP15_1356 0.64 +1.6 1,426,547 - HP15_1356 0.69 +0.6 1,427,089 - HP15_1357 0.24 +1.2 1,427,181 + HP15_1357 0.29 +2.0 1,427,189 - HP15_1357 0.30 -0.8 1,427,195 - HP15_1357 0.30 -0.3 1,427,208 + HP15_1357 0.31 +0.7 1,427,216 - HP15_1357 0.31 +1.5 1,427,236 + HP15_1357 0.32 +0.2 1,427,244 - HP15_1357 0.33 -0.3 1,427,287 + HP15_1357 0.35 +1.6 1,427,287 + HP15_1357 0.35 +1.2 1,427,397 - HP15_1357 0.42 -0.4 1,427,406 - HP15_1357 0.42 +0.9 1,427,414 + HP15_1357 0.43 -1.8 1,427,525 + HP15_1357 0.49 -0.9 1,427,609 + HP15_1357 0.54 +0.1 1,427,745 - HP15_1357 0.61 +1.5 1,427,814 + HP15_1357 0.65 -0.1 1,427,831 + HP15_1357 0.66 +1.5 1,427,871 + HP15_1357 0.68 -0.6 1,427,911 + HP15_1357 0.71 +1.6 1,427,913 - HP15_1357 0.71 -0.1 1,428,151 + HP15_1357 0.84 -0.2 1,428,493 + +0.9 1,428,749 + -0.5 1,428,749 + -1.4 1,428,836 - HP15_1358 0.17 -1.1 1,429,023 - HP15_1358 0.44 -0.2 1,429,064 + HP15_1358 0.49 -2.1 1,429,181 + HP15_1358 0.66 -0.9 1,429,192 + HP15_1358 0.67 -1.4 1,429,192 + HP15_1358 0.67 -2.6 1,429,200 - HP15_1358 0.68 +1.6 1,429,200 - HP15_1358 0.68 -2.2 1,429,317 + HP15_1358 0.85 -2.4 1,429,334 - HP15_1358 0.87 -1.7 1,429,334 - HP15_1358 0.87 -0.5 1,429,409 - -1.0
Or see this region's nucleotide sequence