Experiment: D-Trehalose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_978 and HP15_979 are separated by 121 nucleotides HP15_979 and HP15_980 are separated by 256 nucleotides HP15_980 and HP15_981 overlap by 73 nucleotides HP15_981 and HP15_982 are separated by 140 nucleotides
HP15_978: HP15_978 - major facilitator superfamily MFS_1, at 987,262 to 988,461
_978
HP15_979: HP15_979 - MOSC domain containing protein, at 988,583 to 989,380
_979
HP15_980: HP15_980 - hypothetical protein, at 989,637 to 990,023
_980
HP15_981: HP15_981 - conserved hypothetical protein, at 989,951 to 990,163
_981
HP15_982: HP15_982 - conserved hypothetical protein, membrane, at 990,304 to 993,279
_982
Position (kb) 988
989
990 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 987.621 kb on - strand, within HP15_978 at 987.656 kb on + strand, within HP15_978 at 987.674 kb on - strand, within HP15_978 at 987.701 kb on - strand, within HP15_978 at 987.724 kb on + strand, within HP15_978 at 987.724 kb on + strand, within HP15_978 at 987.732 kb on - strand, within HP15_978 at 987.942 kb on + strand, within HP15_978 at 987.962 kb on + strand, within HP15_978 at 987.996 kb on + strand, within HP15_978 at 988.115 kb on + strand, within HP15_978 at 988.142 kb on - strand, within HP15_978 at 988.199 kb on + strand, within HP15_978 at 988.204 kb on + strand, within HP15_978 at 988.204 kb on + strand, within HP15_978 at 988.207 kb on - strand, within HP15_978 at 988.267 kb on - strand, within HP15_978 at 988.267 kb on - strand, within HP15_978 at 988.334 kb on + strand, within HP15_978 at 988.352 kb on + strand at 988.399 kb on + strand at 988.399 kb on + strand at 988.435 kb on + strand at 988.454 kb on - strand at 988.454 kb on - strand at 988.565 kb on + strand at 988.677 kb on - strand, within HP15_979 at 988.729 kb on + strand, within HP15_979 at 988.764 kb on - strand, within HP15_979 at 989.000 kb on - strand, within HP15_979 at 989.021 kb on + strand, within HP15_979 at 989.260 kb on + strand, within HP15_979 at 989.303 kb on + strand at 989.389 kb on - strand at 989.399 kb on - strand at 989.415 kb on + strand at 989.553 kb on - strand at 989.580 kb on - strand at 989.649 kb on - strand at 989.663 kb on + strand at 989.830 kb on - strand, within HP15_980 at 989.852 kb on + strand, within HP15_980 at 989.852 kb on + strand, within HP15_980 at 989.860 kb on - strand, within HP15_980 at 989.860 kb on - strand, within HP15_980 at 989.929 kb on + strand, within HP15_980 at 989.959 kb on + strand at 990.009 kb on - strand at 990.018 kb on + strand at 990.097 kb on + strand, within HP15_981 at 990.097 kb on + strand, within HP15_981 at 990.105 kb on - strand, within HP15_981 at 990.211 kb on + strand at 990.229 kb on - strand at 990.229 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose remove 987,621 - HP15_978 0.30 -1.0 987,656 + HP15_978 0.33 +1.0 987,674 - HP15_978 0.34 +1.3 987,701 - HP15_978 0.37 -0.4 987,724 + HP15_978 0.39 -0.2 987,724 + HP15_978 0.39 +2.3 987,732 - HP15_978 0.39 -0.2 987,942 + HP15_978 0.57 -0.2 987,962 + HP15_978 0.58 -0.7 987,996 + HP15_978 0.61 +0.7 988,115 + HP15_978 0.71 +0.2 988,142 - HP15_978 0.73 -0.8 988,199 + HP15_978 0.78 -0.1 988,204 + HP15_978 0.79 -0.5 988,204 + HP15_978 0.79 -0.1 988,207 - HP15_978 0.79 -0.4 988,267 - HP15_978 0.84 -0.6 988,267 - HP15_978 0.84 -0.6 988,334 + HP15_978 0.89 -0.3 988,352 + -0.2 988,399 + -0.2 988,399 + -3.0 988,435 + -0.4 988,454 - +0.8 988,454 - +1.6 988,565 + -0.6 988,677 - HP15_979 0.12 +1.5 988,729 + HP15_979 0.18 +1.3 988,764 - HP15_979 0.23 +0.4 989,000 - HP15_979 0.52 +0.0 989,021 + HP15_979 0.55 +0.5 989,260 + HP15_979 0.85 +0.4 989,303 + +0.1 989,389 - +1.2 989,399 - -0.7 989,415 + +0.4 989,553 - -0.6 989,580 - +1.0 989,649 - -0.3 989,663 + -0.2 989,830 - HP15_980 0.50 -0.4 989,852 + HP15_980 0.56 +0.3 989,852 + HP15_980 0.56 +1.1 989,860 - HP15_980 0.58 -1.3 989,860 - HP15_980 0.58 -0.8 989,929 + HP15_980 0.75 -0.2 989,959 + -0.1 990,009 - -0.1 990,018 + +0.1 990,097 + HP15_981 0.69 -0.8 990,097 + HP15_981 0.69 -1.0 990,105 - HP15_981 0.72 -0.2 990,211 + +1.3 990,229 - -1.2 990,229 - +0.6
Or see this region's nucleotide sequence