Experiment: PYE_noCalcium 25C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00777 and CCNA_00778 are separated by 159 nucleotides CCNA_00778 and CCNA_00779 are separated by 566 nucleotides CCNA_00779 and CCNA_00780 are separated by 13 nucleotides
CCNA_00777: CCNA_00777 - PAS family GGDEF/EAL protein, at 835,363 to 837,786
_00777
CCNA_00778: CCNA_00778 - GTP-binding protein TypA/BipA, at 837,946 to 839,778
_00778
CCNA_00779: CCNA_00779 - TonB superfamily protein, at 840,345 to 840,746
_00779
CCNA_00780: CCNA_00780 - N-formylglutamate deformylase, at 840,760 to 841,686
_00780
Position (kb) 837
838
839
840 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 836.955 kb on + strand, within CCNA_00777 at 836.955 kb on + strand, within CCNA_00777 at 836.963 kb on - strand, within CCNA_00777 at 836.978 kb on - strand, within CCNA_00777 at 837.022 kb on + strand, within CCNA_00777 at 837.054 kb on + strand, within CCNA_00777 at 837.093 kb on + strand at 837.137 kb on + strand, within CCNA_00777 at 837.152 kb on + strand, within CCNA_00777 at 837.184 kb on - strand, within CCNA_00777 at 837.192 kb on - strand, within CCNA_00777 at 837.213 kb on - strand, within CCNA_00777 at 837.276 kb on - strand, within CCNA_00777 at 837.329 kb on - strand, within CCNA_00777 at 837.388 kb on - strand, within CCNA_00777 at 837.393 kb on - strand, within CCNA_00777 at 837.393 kb on - strand, within CCNA_00777 at 837.397 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.458 kb on + strand, within CCNA_00777 at 837.505 kb on + strand, within CCNA_00777 at 837.510 kb on + strand, within CCNA_00777 at 837.513 kb on - strand, within CCNA_00777 at 837.516 kb on + strand, within CCNA_00777 at 837.520 kb on - strand, within CCNA_00777 at 837.524 kb on - strand, within CCNA_00777 at 837.553 kb on + strand at 837.566 kb on - strand at 837.595 kb on + strand at 837.615 kb on + strand at 837.615 kb on + strand at 837.643 kb on + strand at 837.670 kb on + strand at 837.684 kb on - strand at 837.716 kb on + strand at 837.716 kb on - strand at 837.792 kb on + strand at 837.800 kb on - strand at 837.800 kb on - strand at 837.800 kb on - strand at 837.836 kb on + strand at 837.861 kb on - strand at 837.861 kb on - strand at 837.910 kb on + strand at 837.910 kb on + strand at 837.918 kb on - strand at 837.982 kb on + strand at 837.982 kb on + strand at 837.990 kb on - strand at 837.990 kb on - strand at 838.002 kb on + strand at 838.022 kb on + strand at 838.065 kb on - strand at 838.070 kb on - strand at 838.070 kb on - strand at 838.078 kb on - strand at 838.113 kb on - strand at 838.158 kb on + strand, within CCNA_00778 at 838.245 kb on + strand, within CCNA_00778 at 838.245 kb on + strand, within CCNA_00778 at 838.245 kb on + strand, within CCNA_00778 at 838.252 kb on + strand, within CCNA_00778 at 838.252 kb on + strand, within CCNA_00778 at 838.253 kb on - strand, within CCNA_00778 at 838.304 kb on + strand, within CCNA_00778 at 838.304 kb on + strand, within CCNA_00778 at 838.304 kb on + strand, within CCNA_00778 at 838.304 kb on + strand, within CCNA_00778 at 838.312 kb on - strand, within CCNA_00778 at 838.312 kb on - strand, within CCNA_00778 at 838.312 kb on - strand, within CCNA_00778 at 838.368 kb on - strand, within CCNA_00778 at 838.370 kb on + strand at 838.432 kb on + strand, within CCNA_00778 at 838.455 kb on - strand, within CCNA_00778 at 838.455 kb on - strand, within CCNA_00778 at 838.477 kb on - strand, within CCNA_00778 at 838.546 kb on + strand, within CCNA_00778 at 838.597 kb on - strand, within CCNA_00778 at 838.631 kb on - strand, within CCNA_00778 at 838.631 kb on - strand, within CCNA_00778 at 838.746 kb on - strand, within CCNA_00778 at 838.786 kb on + strand, within CCNA_00778 at 838.790 kb on - strand, within CCNA_00778 at 838.816 kb on + strand, within CCNA_00778 at 838.824 kb on - strand, within CCNA_00778 at 838.872 kb on - strand, within CCNA_00778 at 838.895 kb on - strand, within CCNA_00778 at 838.899 kb on + strand, within CCNA_00778 at 838.924 kb on - strand, within CCNA_00778 at 838.996 kb on + strand, within CCNA_00778 at 838.996 kb on + strand, within CCNA_00778 at 839.051 kb on + strand, within CCNA_00778 at 839.052 kb on - strand, within CCNA_00778 at 839.052 kb on - strand, within CCNA_00778 at 839.052 kb on - strand, within CCNA_00778 at 839.052 kb on - strand, within CCNA_00778 at 839.083 kb on - strand, within CCNA_00778 at 839.126 kb on + strand, within CCNA_00778 at 839.226 kb on + strand, within CCNA_00778 at 839.252 kb on + strand, within CCNA_00778 at 839.255 kb on - strand, within CCNA_00778 at 839.255 kb on - strand, within CCNA_00778 at 839.279 kb on + strand, within CCNA_00778 at 839.287 kb on - strand, within CCNA_00778 at 839.287 kb on - strand, within CCNA_00778 at 839.287 kb on - strand, within CCNA_00778 at 839.296 kb on + strand, within CCNA_00778 at 839.312 kb on - strand, within CCNA_00778 at 839.324 kb on + strand, within CCNA_00778 at 839.359 kb on + strand, within CCNA_00778 at 839.367 kb on - strand, within CCNA_00778 at 839.434 kb on - strand, within CCNA_00778 at 839.434 kb on - strand, within CCNA_00778 at 839.449 kb on - strand, within CCNA_00778 at 839.449 kb on - strand, within CCNA_00778 at 839.449 kb on - strand, within CCNA_00778 at 839.499 kb on - strand, within CCNA_00778 at 839.585 kb on + strand, within CCNA_00778 at 839.596 kb on - strand at 839.596 kb on - strand at 839.629 kb on - strand at 839.677 kb on - strand at 839.693 kb on + strand at 839.724 kb on - strand at 839.802 kb on + strand at 839.810 kb on - strand at 839.817 kb on - strand at 839.832 kb on - strand at 839.884 kb on - strand at 840.100 kb on - strand at 840.244 kb on + strand at 840.244 kb on + strand at 840.250 kb on - strand at 840.262 kb on + strand at 840.271 kb on + strand at 840.319 kb on - strand at 840.350 kb on - strand at 840.385 kb on + strand at 840.385 kb on + strand at 840.393 kb on - strand, within CCNA_00779 at 840.393 kb on - strand, within CCNA_00779 at 840.395 kb on + strand, within CCNA_00779 at 840.403 kb on - strand, within CCNA_00779 at 840.450 kb on + strand, within CCNA_00779 at 840.452 kb on + strand, within CCNA_00779 at 840.466 kb on + strand, within CCNA_00779 at 840.474 kb on - strand, within CCNA_00779 at 840.488 kb on + strand, within CCNA_00779 at 840.515 kb on + strand, within CCNA_00779 at 840.523 kb on - strand, within CCNA_00779 at 840.536 kb on + strand, within CCNA_00779 at 840.556 kb on + strand, within CCNA_00779 at 840.600 kb on + strand, within CCNA_00779 at 840.601 kb on + strand, within CCNA_00779 at 840.601 kb on + strand, within CCNA_00779 at 840.601 kb on + strand, within CCNA_00779 at 840.601 kb on + strand, within CCNA_00779 at 840.609 kb on - strand, within CCNA_00779 at 840.609 kb on - strand, within CCNA_00779 at 840.609 kb on - strand, within CCNA_00779 at 840.616 kb on + strand, within CCNA_00779 at 840.621 kb on + strand, within CCNA_00779 at 840.621 kb on + strand, within CCNA_00779 at 840.621 kb on + strand, within CCNA_00779 at 840.629 kb on - strand, within CCNA_00779 at 840.629 kb on - strand, within CCNA_00779 at 840.637 kb on + strand, within CCNA_00779 at 840.657 kb on + strand, within CCNA_00779 at 840.670 kb on - strand, within CCNA_00779 at 840.761 kb on - strand at 840.763 kb on + strand at 840.771 kb on - strand at 840.772 kb on + strand at 840.777 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE_noCalcium 25C remove 836,955 + CCNA_00777 0.66 -0.0 836,955 + CCNA_00777 0.66 +0.8 836,963 - CCNA_00777 0.66 +1.2 836,978 - CCNA_00777 0.67 +0.4 837,022 + CCNA_00777 0.68 +1.0 837,054 + CCNA_00777 0.70 -0.2 837,093 + +0.8 837,137 + CCNA_00777 0.73 -0.7 837,152 + CCNA_00777 0.74 +0.6 837,184 - CCNA_00777 0.75 +0.3 837,192 - CCNA_00777 0.75 +0.2 837,213 - CCNA_00777 0.76 +0.1 837,276 - CCNA_00777 0.79 +0.2 837,329 - CCNA_00777 0.81 -0.7 837,388 - CCNA_00777 0.84 +0.0 837,393 - CCNA_00777 0.84 -0.1 837,393 - CCNA_00777 0.84 -1.0 837,397 + CCNA_00777 0.84 -1.4 837,422 + CCNA_00777 0.85 +1.8 837,422 + CCNA_00777 0.85 -1.5 837,422 + CCNA_00777 0.85 -0.6 837,422 + CCNA_00777 0.85 -0.2 837,422 + CCNA_00777 0.85 -1.3 837,422 + CCNA_00777 0.85 -0.9 837,422 + CCNA_00777 0.85 -1.0 837,422 + CCNA_00777 0.85 -0.6 837,430 - CCNA_00777 0.85 +0.3 837,430 - CCNA_00777 0.85 -0.7 837,430 - CCNA_00777 0.85 +0.7 837,430 - CCNA_00777 0.85 -1.4 837,430 - CCNA_00777 0.85 +1.3 837,430 - CCNA_00777 0.85 +0.2 837,430 - CCNA_00777 0.85 -0.4 837,430 - CCNA_00777 0.85 +0.2 837,430 - CCNA_00777 0.85 +0.1 837,430 - CCNA_00777 0.85 -0.2 837,430 - CCNA_00777 0.85 -0.3 837,430 - CCNA_00777 0.85 -0.8 837,458 + CCNA_00777 0.86 -0.1 837,505 + CCNA_00777 0.88 -0.3 837,510 + CCNA_00777 0.89 -0.7 837,513 - CCNA_00777 0.89 +1.0 837,516 + CCNA_00777 0.89 +1.3 837,520 - CCNA_00777 0.89 +0.0 837,524 - CCNA_00777 0.89 -1.0 837,553 + +2.2 837,566 - -0.3 837,595 + +0.8 837,615 + -1.7 837,615 + +1.3 837,643 + -0.8 837,670 + -1.3 837,684 - -0.6 837,716 + -0.2 837,716 - -0.5 837,792 + +0.7 837,800 - -0.1 837,800 - +0.1 837,800 - -0.4 837,836 + -0.6 837,861 - +0.6 837,861 - +0.2 837,910 + -0.4 837,910 + +0.6 837,918 - -0.3 837,982 + +1.2 837,982 + +0.8 837,990 - -3.6 837,990 - -1.9 838,002 + +0.9 838,022 + +0.2 838,065 - -1.4 838,070 - -2.1 838,070 - -1.7 838,078 - -1.9 838,113 - -1.1 838,158 + CCNA_00778 0.12 -1.2 838,245 + CCNA_00778 0.16 -1.7 838,245 + CCNA_00778 0.16 +1.2 838,245 + CCNA_00778 0.16 -0.4 838,252 + CCNA_00778 0.17 -0.4 838,252 + CCNA_00778 0.17 -0.0 838,253 - CCNA_00778 0.17 -2.1 838,304 + CCNA_00778 0.20 +2.2 838,304 + CCNA_00778 0.20 +0.2 838,304 + CCNA_00778 0.20 -0.4 838,304 + CCNA_00778 0.20 +0.6 838,312 - CCNA_00778 0.20 -0.5 838,312 - CCNA_00778 0.20 -0.3 838,312 - CCNA_00778 0.20 -1.2 838,368 - CCNA_00778 0.23 -1.2 838,370 + +0.6 838,432 + CCNA_00778 0.27 -2.5 838,455 - CCNA_00778 0.28 -1.3 838,455 - CCNA_00778 0.28 -0.8 838,477 - CCNA_00778 0.29 -2.2 838,546 + CCNA_00778 0.33 -1.8 838,597 - CCNA_00778 0.36 +1.6 838,631 - CCNA_00778 0.37 -1.8 838,631 - CCNA_00778 0.37 -2.4 838,746 - CCNA_00778 0.44 -0.4 838,786 + CCNA_00778 0.46 -0.6 838,790 - CCNA_00778 0.46 -2.5 838,816 + CCNA_00778 0.47 -1.5 838,824 - CCNA_00778 0.48 -1.0 838,872 - CCNA_00778 0.51 -0.5 838,895 - CCNA_00778 0.52 -1.2 838,899 + CCNA_00778 0.52 -0.3 838,924 - CCNA_00778 0.53 -1.2 838,996 + CCNA_00778 0.57 +0.6 838,996 + CCNA_00778 0.57 +0.2 839,051 + CCNA_00778 0.60 -1.3 839,052 - CCNA_00778 0.60 -0.4 839,052 - CCNA_00778 0.60 -2.2 839,052 - CCNA_00778 0.60 -2.7 839,052 - CCNA_00778 0.60 -1.2 839,083 - CCNA_00778 0.62 -0.6 839,126 + CCNA_00778 0.64 +1.2 839,226 + CCNA_00778 0.70 -2.9 839,252 + CCNA_00778 0.71 +0.6 839,255 - CCNA_00778 0.71 -2.5 839,255 - CCNA_00778 0.71 -1.1 839,279 + CCNA_00778 0.73 +1.2 839,287 - CCNA_00778 0.73 -0.4 839,287 - CCNA_00778 0.73 -1.8 839,287 - CCNA_00778 0.73 -1.0 839,296 + CCNA_00778 0.74 +1.6 839,312 - CCNA_00778 0.75 -0.8 839,324 + CCNA_00778 0.75 +0.2 839,359 + CCNA_00778 0.77 +1.2 839,367 - CCNA_00778 0.78 -0.8 839,434 - CCNA_00778 0.81 -1.6 839,434 - CCNA_00778 0.81 -0.2 839,449 - CCNA_00778 0.82 -1.8 839,449 - CCNA_00778 0.82 -0.7 839,449 - CCNA_00778 0.82 -0.9 839,499 - CCNA_00778 0.85 -1.1 839,585 + CCNA_00778 0.89 -0.7 839,596 - -1.4 839,596 - -0.1 839,629 - -0.2 839,677 - -0.4 839,693 + +0.6 839,724 - -0.8 839,802 + -0.0 839,810 - +0.5 839,817 - +0.3 839,832 - -0.5 839,884 - -1.0 840,100 - +0.4 840,244 + -0.2 840,244 + -0.4 840,250 - -1.3 840,262 + -1.0 840,271 + -0.7 840,319 - +0.3 840,350 - +0.3 840,385 + +0.3 840,385 + -0.3 840,393 - CCNA_00779 0.12 -0.1 840,393 - CCNA_00779 0.12 -0.5 840,395 + CCNA_00779 0.12 +0.6 840,403 - CCNA_00779 0.14 -2.2 840,450 + CCNA_00779 0.26 +2.4 840,452 + CCNA_00779 0.27 -0.3 840,466 + CCNA_00779 0.30 +0.3 840,474 - CCNA_00779 0.32 -1.2 840,488 + CCNA_00779 0.36 -1.2 840,515 + CCNA_00779 0.42 -0.8 840,523 - CCNA_00779 0.44 -0.2 840,536 + CCNA_00779 0.48 -0.7 840,556 + CCNA_00779 0.52 +1.2 840,600 + CCNA_00779 0.63 +0.1 840,601 + CCNA_00779 0.64 -0.6 840,601 + CCNA_00779 0.64 +0.3 840,601 + CCNA_00779 0.64 +1.5 840,601 + CCNA_00779 0.64 -0.5 840,609 - CCNA_00779 0.66 -0.8 840,609 - CCNA_00779 0.66 +0.0 840,609 - CCNA_00779 0.66 +0.5 840,616 + CCNA_00779 0.67 +0.3 840,621 + CCNA_00779 0.69 +0.2 840,621 + CCNA_00779 0.69 +0.2 840,621 + CCNA_00779 0.69 +0.2 840,629 - CCNA_00779 0.71 +0.1 840,629 - CCNA_00779 0.71 +0.2 840,637 + CCNA_00779 0.73 -1.9 840,657 + CCNA_00779 0.78 +0.8 840,670 - CCNA_00779 0.81 -0.3 840,761 - -0.4 840,763 + -0.9 840,771 - -0.2 840,772 + +0.2 840,777 + +0.1
Or see this region's nucleotide sequence