Experiment: PYE_noCalcium 25C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00161 and CCNA_00162 are separated by 71 nucleotides CCNA_00162 and CCNA_00163 are separated by 46 nucleotides
CCNA_00161: CCNA_00161 - hypothetical protein, at 170,951 to 171,577
_00161
CCNA_00162: CCNA_00162 - hypothetical protein, at 171,649 to 172,917
_00162
CCNA_00163: CCNA_00163 - exopolysaccharide transport family protein, at 172,964 to 175,183
_00163
Position (kb) 171
172
173 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 170.727 kb on + strand at 170.735 kb on - strand at 170.798 kb on - strand at 170.907 kb on + strand at 170.915 kb on - strand at 170.963 kb on + strand at 171.085 kb on + strand, within CCNA_00161 at 171.266 kb on + strand, within CCNA_00161 at 171.266 kb on + strand, within CCNA_00161 at 171.405 kb on + strand, within CCNA_00161 at 171.421 kb on + strand, within CCNA_00161 at 171.438 kb on + strand, within CCNA_00161 at 171.464 kb on + strand, within CCNA_00161 at 171.528 kb on - strand at 171.640 kb on + strand at 171.721 kb on + strand at 171.836 kb on + strand, within CCNA_00162 at 171.861 kb on + strand, within CCNA_00162 at 171.897 kb on + strand, within CCNA_00162 at 171.943 kb on + strand, within CCNA_00162 at 171.950 kb on + strand, within CCNA_00162 at 171.982 kb on - strand, within CCNA_00162 at 172.024 kb on + strand, within CCNA_00162 at 172.058 kb on + strand, within CCNA_00162 at 172.068 kb on + strand, within CCNA_00162 at 172.073 kb on + strand, within CCNA_00162 at 172.111 kb on + strand, within CCNA_00162 at 172.236 kb on + strand, within CCNA_00162 at 172.494 kb on + strand, within CCNA_00162 at 172.601 kb on + strand, within CCNA_00162 at 172.906 kb on + strand at 172.911 kb on + strand at 172.961 kb on + strand at 173.155 kb on + strand at 173.155 kb on + strand at 173.155 kb on + strand at 173.155 kb on + strand at 173.163 kb on - strand at 173.163 kb on - strand at 173.291 kb on - strand, within CCNA_00163 at 173.332 kb on + strand, within CCNA_00163 at 173.340 kb on - strand, within CCNA_00163 at 173.359 kb on + strand, within CCNA_00163 at 173.434 kb on - strand, within CCNA_00163 at 173.457 kb on + strand, within CCNA_00163 at 173.477 kb on + strand, within CCNA_00163 at 173.618 kb on + strand, within CCNA_00163 at 173.628 kb on + strand, within CCNA_00163 at 173.658 kb on - strand, within CCNA_00163 at 173.713 kb on + strand, within CCNA_00163 at 173.798 kb on + strand, within CCNA_00163 at 173.806 kb on - strand, within CCNA_00163 at 173.806 kb on - strand, within CCNA_00163 at 173.835 kb on + strand, within CCNA_00163 at 173.835 kb on + strand, within CCNA_00163
Per-strain Table
Position Strand Gene LocusTag Fraction PYE_noCalcium 25C remove 170,727 + +0.1 170,735 - +0.2 170,798 - +2.1 170,907 + -0.3 170,915 - +0.6 170,963 + +0.0 171,085 + CCNA_00161 0.21 -0.7 171,266 + CCNA_00161 0.50 -0.0 171,266 + CCNA_00161 0.50 +0.5 171,405 + CCNA_00161 0.72 +0.1 171,421 + CCNA_00161 0.75 -0.2 171,438 + CCNA_00161 0.78 +0.5 171,464 + CCNA_00161 0.82 +0.4 171,528 - +0.3 171,640 + -0.2 171,721 + -1.5 171,836 + CCNA_00162 0.15 -2.5 171,861 + CCNA_00162 0.17 -1.5 171,897 + CCNA_00162 0.20 -2.1 171,943 + CCNA_00162 0.23 -1.8 171,950 + CCNA_00162 0.24 -1.5 171,982 - CCNA_00162 0.26 -3.1 172,024 + CCNA_00162 0.30 -2.4 172,058 + CCNA_00162 0.32 +0.9 172,068 + CCNA_00162 0.33 -0.7 172,073 + CCNA_00162 0.33 -1.6 172,111 + CCNA_00162 0.36 -2.2 172,236 + CCNA_00162 0.46 -1.7 172,494 + CCNA_00162 0.67 -1.7 172,601 + CCNA_00162 0.75 -0.4 172,906 + -1.0 172,911 + +0.5 172,961 + -0.4 173,155 + -2.0 173,155 + -3.4 173,155 + -2.3 173,155 + -1.3 173,163 - +0.1 173,163 - +0.4 173,291 - CCNA_00163 0.15 +0.6 173,332 + CCNA_00163 0.17 -2.3 173,340 - CCNA_00163 0.17 +0.6 173,359 + CCNA_00163 0.18 -1.2 173,434 - CCNA_00163 0.21 +2.1 173,457 + CCNA_00163 0.22 -1.7 173,477 + CCNA_00163 0.23 -2.4 173,618 + CCNA_00163 0.29 -2.4 173,628 + CCNA_00163 0.30 -2.6 173,658 - CCNA_00163 0.31 +1.1 173,713 + CCNA_00163 0.34 -1.9 173,798 + CCNA_00163 0.38 -2.5 173,806 - CCNA_00163 0.38 -0.7 173,806 - CCNA_00163 0.38 -0.8 173,835 + CCNA_00163 0.39 -1.6 173,835 + CCNA_00163 0.39 -1.0
Or see this region's nucleotide sequence