Experiment: m.b. Bacitracin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4112 and Dshi_4113 overlap by 4 nucleotides Dshi_4113 and Dshi_4114 are separated by 186 nucleotides Dshi_4114 and Dshi_4115 are separated by 4 nucleotides
Dshi_4112: Dshi_4112 - prevent-host-death family protein (RefSeq), at 45,616 to 45,843
_4112
Dshi_4113: Dshi_4113 - death-on-curing family protein (RefSeq), at 45,840 to 46,232
_4113
Dshi_4114: Dshi_4114 - dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq), at 46,419 to 46,973
_4114
Dshi_4115: Dshi_4115 - dTDP-glucose 4,6-dehydratase (RefSeq), at 46,978 to 48,018
_4115
Position (kb)
46
47 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 45.422 kb on - strand at 45.423 kb on + strand at 45.423 kb on - strand at 45.423 kb on - strand at 45.423 kb on - strand at 45.432 kb on - strand at 45.438 kb on - strand at 45.446 kb on + strand at 45.454 kb on - strand at 45.503 kb on + strand at 45.506 kb on - strand at 45.508 kb on + strand at 45.508 kb on + strand at 45.536 kb on + strand at 45.547 kb on + strand at 45.547 kb on + strand at 45.555 kb on - strand at 45.555 kb on - strand at 45.944 kb on - strand, within Dshi_4113 at 45.951 kb on + strand, within Dshi_4113 at 46.229 kb on - strand at 46.435 kb on + strand at 46.528 kb on + strand, within Dshi_4114 at 46.590 kb on + strand, within Dshi_4114 at 47.071 kb on + strand at 47.312 kb on + strand, within Dshi_4115 at 47.312 kb on + strand, within Dshi_4115 at 47.312 kb on + strand, within Dshi_4115 at 47.320 kb on - strand, within Dshi_4115 at 47.406 kb on - strand, within Dshi_4115 at 47.548 kb on - strand, within Dshi_4115 at 47.584 kb on - strand, within Dshi_4115 at 47.584 kb on - strand, within Dshi_4115 at 47.607 kb on + strand, within Dshi_4115 at 47.670 kb on + strand, within Dshi_4115 at 47.757 kb on - strand, within Dshi_4115 at 47.796 kb on + strand, within Dshi_4115
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.1 mg/ml remove 45,422 - -0.5 45,423 + -2.9 45,423 - -0.7 45,423 - -0.3 45,423 - -0.3 45,432 - +0.1 45,438 - -0.5 45,446 + -1.1 45,454 - -0.9 45,503 + -0.5 45,506 - +0.2 45,508 + -1.6 45,508 + -0.6 45,536 + +1.0 45,547 + -1.6 45,547 + -0.6 45,555 - -0.9 45,555 - +0.1 45,944 - Dshi_4113 0.26 +0.1 45,951 + Dshi_4113 0.28 +0.1 46,229 - -1.3 46,435 + +1.2 46,528 + Dshi_4114 0.20 +2.8 46,590 + Dshi_4114 0.31 +1.5 47,071 + +0.1 47,312 + Dshi_4115 0.32 +1.8 47,312 + Dshi_4115 0.32 +2.1 47,312 + Dshi_4115 0.32 +1.9 47,320 - Dshi_4115 0.33 +0.0 47,406 - Dshi_4115 0.41 +1.6 47,548 - Dshi_4115 0.55 +1.1 47,584 - Dshi_4115 0.58 +1.4 47,584 - Dshi_4115 0.58 +0.4 47,607 + Dshi_4115 0.60 +1.2 47,670 + Dshi_4115 0.66 +1.5 47,757 - Dshi_4115 0.75 +1.2 47,796 + Dshi_4115 0.79 +0.4
Or see this region's nucleotide sequence