Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2959

Experiment: m.b. Bacitracin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2958 and Dshi_2959 overlap by 4 nucleotidesDshi_2959 and Dshi_2960 overlap by 4 nucleotidesDshi_2960 and Dshi_2961 overlap by 4 nucleotides Dshi_2958: Dshi_2958 - Xanthine dehydrogenase (EC 1.17.1.4) (from data), at 3,121,712 to 3,123,163 _2958 Dshi_2959: Dshi_2959 - Xanthine dehydrogenase (EC 1.17.1.4) (from data), at 3,123,160 to 3,125,505 _2959 Dshi_2960: Dshi_2960 - Xanthine dehydrogenase accessory protein XdhC (RefSeq), at 3,125,502 to 3,126,464 _2960 Dshi_2961: Dshi_2961 - ABC transporter related (RefSeq), at 3,126,461 to 3,127,996 _2961 Position (kb) 3123 3124 3125 3126Strain fitness (log2 ratio) -2 -1 0 1 2at 3122.164 kb on - strand, within Dshi_2958at 3122.184 kb on + strand, within Dshi_2958at 3122.303 kb on + strand, within Dshi_2958at 3122.343 kb on + strand, within Dshi_2958at 3122.404 kb on + strand, within Dshi_2958at 3122.472 kb on - strand, within Dshi_2958at 3122.498 kb on - strand, within Dshi_2958at 3122.538 kb on - strand, within Dshi_2958at 3122.685 kb on + strand, within Dshi_2958at 3122.687 kb on - strand, within Dshi_2958at 3122.687 kb on - strand, within Dshi_2958at 3122.687 kb on - strand, within Dshi_2958at 3122.695 kb on + strand, within Dshi_2958at 3122.703 kb on - strand, within Dshi_2958at 3122.710 kb on - strand, within Dshi_2958at 3122.880 kb on + strand, within Dshi_2958at 3122.953 kb on + strand, within Dshi_2958at 3122.980 kb on - strand, within Dshi_2958at 3122.980 kb on - strand, within Dshi_2958at 3123.001 kb on + strand, within Dshi_2958at 3123.079 kb on + strandat 3123.235 kb on + strandat 3123.260 kb on + strandat 3123.266 kb on + strandat 3123.405 kb on - strand, within Dshi_2959at 3123.425 kb on - strand, within Dshi_2959at 3123.437 kb on + strand, within Dshi_2959at 3123.486 kb on + strand, within Dshi_2959at 3123.599 kb on - strand, within Dshi_2959at 3123.611 kb on - strand, within Dshi_2959at 3123.633 kb on + strand, within Dshi_2959at 3123.691 kb on + strand, within Dshi_2959at 3123.823 kb on - strand, within Dshi_2959at 3123.859 kb on + strand, within Dshi_2959at 3123.871 kb on + strand, within Dshi_2959at 3124.168 kb on - strand, within Dshi_2959at 3124.168 kb on - strand, within Dshi_2959at 3124.170 kb on + strand, within Dshi_2959at 3124.170 kb on + strand, within Dshi_2959at 3124.264 kb on - strand, within Dshi_2959at 3124.377 kb on - strand, within Dshi_2959at 3124.388 kb on + strand, within Dshi_2959at 3124.516 kb on + strand, within Dshi_2959at 3124.554 kb on + strand, within Dshi_2959at 3124.577 kb on - strand, within Dshi_2959at 3124.587 kb on + strand, within Dshi_2959at 3124.596 kb on - strand, within Dshi_2959at 3124.609 kb on + strand, within Dshi_2959at 3124.647 kb on + strand, within Dshi_2959at 3124.952 kb on - strand, within Dshi_2959at 3124.979 kb on - strand, within Dshi_2959at 3124.982 kb on + strand, within Dshi_2959at 3124.991 kb on - strand, within Dshi_2959at 3125.004 kb on + strand, within Dshi_2959at 3125.012 kb on - strand, within Dshi_2959at 3125.050 kb on + strand, within Dshi_2959at 3125.053 kb on - strand, within Dshi_2959at 3125.171 kb on + strand, within Dshi_2959at 3125.171 kb on + strand, within Dshi_2959at 3125.219 kb on - strand, within Dshi_2959at 3125.438 kb on + strandat 3125.448 kb on + strandat 3125.750 kb on - strand, within Dshi_2960at 3125.766 kb on + strand, within Dshi_2960at 3125.813 kb on + strand, within Dshi_2960at 3125.965 kb on + strand, within Dshi_2960at 3125.997 kb on + strand, within Dshi_2960at 3126.056 kb on + strand, within Dshi_2960at 3126.057 kb on + strand, within Dshi_2960at 3126.172 kb on + strand, within Dshi_2960at 3126.239 kb on + strand, within Dshi_2960at 3126.373 kb on + strandat 3126.434 kb on + strandat 3126.490 kb on + strandat 3126.504 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.1 mg/ml
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3,122,164 - Dshi_2958 0.31 -1.1
3,122,184 + Dshi_2958 0.33 +0.1
3,122,303 + Dshi_2958 0.41 -0.0
3,122,343 + Dshi_2958 0.43 +0.4
3,122,404 + Dshi_2958 0.48 -0.1
3,122,472 - Dshi_2958 0.52 +0.8
3,122,498 - Dshi_2958 0.54 -0.5
3,122,538 - Dshi_2958 0.57 +1.0
3,122,685 + Dshi_2958 0.67 +0.6
3,122,687 - Dshi_2958 0.67 +0.9
3,122,687 - Dshi_2958 0.67 -0.0
3,122,687 - Dshi_2958 0.67 +0.3
3,122,695 + Dshi_2958 0.68 -0.2
3,122,703 - Dshi_2958 0.68 +0.2
3,122,710 - Dshi_2958 0.69 +2.4
3,122,880 + Dshi_2958 0.80 +0.2
3,122,953 + Dshi_2958 0.85 +0.3
3,122,980 - Dshi_2958 0.87 +1.1
3,122,980 - Dshi_2958 0.87 +0.5
3,123,001 + Dshi_2958 0.89 +0.6
3,123,079 + +0.4
3,123,235 + -0.1
3,123,260 + -0.2
3,123,266 + +0.7
3,123,405 - Dshi_2959 0.10 -0.3
3,123,425 - Dshi_2959 0.11 +0.1
3,123,437 + Dshi_2959 0.12 +0.2
3,123,486 + Dshi_2959 0.14 -1.2
3,123,599 - Dshi_2959 0.19 +0.4
3,123,611 - Dshi_2959 0.19 +1.1
3,123,633 + Dshi_2959 0.20 -0.5
3,123,691 + Dshi_2959 0.23 -0.3
3,123,823 - Dshi_2959 0.28 -0.2
3,123,859 + Dshi_2959 0.30 +0.5
3,123,871 + Dshi_2959 0.30 +0.4
3,124,168 - Dshi_2959 0.43 +0.4
3,124,168 - Dshi_2959 0.43 -0.1
3,124,170 + Dshi_2959 0.43 +0.3
3,124,170 + Dshi_2959 0.43 +0.2
3,124,264 - Dshi_2959 0.47 +0.0
3,124,377 - Dshi_2959 0.52 +0.6
3,124,388 + Dshi_2959 0.52 -0.5
3,124,516 + Dshi_2959 0.58 -1.3
3,124,554 + Dshi_2959 0.59 -0.2
3,124,577 - Dshi_2959 0.60 +0.5
3,124,587 + Dshi_2959 0.61 +0.6
3,124,596 - Dshi_2959 0.61 -0.1
3,124,609 + Dshi_2959 0.62 -1.8
3,124,647 + Dshi_2959 0.63 +1.4
3,124,952 - Dshi_2959 0.76 -0.0
3,124,979 - Dshi_2959 0.78 -1.2
3,124,982 + Dshi_2959 0.78 +0.4
3,124,991 - Dshi_2959 0.78 -0.3
3,125,004 + Dshi_2959 0.79 +1.2
3,125,012 - Dshi_2959 0.79 +1.8
3,125,050 + Dshi_2959 0.81 +0.9
3,125,053 - Dshi_2959 0.81 +0.3
3,125,171 + Dshi_2959 0.86 -0.0
3,125,171 + Dshi_2959 0.86 +0.1
3,125,219 - Dshi_2959 0.88 -0.5
3,125,438 + +0.8
3,125,448 + +0.2
3,125,750 - Dshi_2960 0.26 +0.7
3,125,766 + Dshi_2960 0.27 -1.1
3,125,813 + Dshi_2960 0.32 -0.5
3,125,965 + Dshi_2960 0.48 -0.3
3,125,997 + Dshi_2960 0.51 +0.2
3,126,056 + Dshi_2960 0.58 -1.9
3,126,057 + Dshi_2960 0.58 -0.4
3,126,172 + Dshi_2960 0.70 +0.4
3,126,239 + Dshi_2960 0.77 +0.5
3,126,373 + -0.3
3,126,434 + +1.1
3,126,490 + -0.5
3,126,504 - +0.6

Or see this region's nucleotide sequence