Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2894

Experiment: m.b. Bacitracin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2893 and Dshi_2894 are separated by 63 nucleotidesDshi_2894 and Dshi_2895 are separated by 22 nucleotides Dshi_2893: Dshi_2893 - peptidase S1 and S6 chymotrypsin/Hap (RefSeq), at 3,048,258 to 3,049,076 _2893 Dshi_2894: Dshi_2894 - protein of unknown function DUF224 cysteine-rich region domain protein (RefSeq), at 3,049,140 to 3,050,444 _2894 Dshi_2895: Dshi_2895 - FAD linked oxidase domain protein (RefSeq), at 3,050,467 to 3,051,603 _2895 Position (kb) 3049 3050 3051Strain fitness (log2 ratio) -1 0 1at 3048.156 kb on + strandat 3048.264 kb on - strandat 3048.264 kb on - strandat 3048.336 kb on + strandat 3048.352 kb on + strand, within Dshi_2893at 3048.357 kb on + strand, within Dshi_2893at 3048.441 kb on - strand, within Dshi_2893at 3048.480 kb on + strand, within Dshi_2893at 3048.488 kb on - strand, within Dshi_2893at 3048.715 kb on - strand, within Dshi_2893at 3048.890 kb on + strand, within Dshi_2893at 3048.898 kb on - strand, within Dshi_2893at 3049.122 kb on - strandat 3049.131 kb on + strandat 3049.148 kb on + strandat 3049.153 kb on + strandat 3049.153 kb on + strandat 3049.360 kb on + strand, within Dshi_2894at 3049.452 kb on - strand, within Dshi_2894at 3049.452 kb on - strand, within Dshi_2894at 3049.529 kb on + strand, within Dshi_2894at 3049.555 kb on - strand, within Dshi_2894at 3049.810 kb on - strand, within Dshi_2894at 3049.976 kb on + strand, within Dshi_2894at 3050.004 kb on + strand, within Dshi_2894at 3050.010 kb on - strand, within Dshi_2894at 3050.324 kb on + strandat 3050.332 kb on - strandat 3050.387 kb on + strandat 3050.387 kb on + strandat 3050.436 kb on + strandat 3050.491 kb on - strandat 3050.528 kb on - strandat 3050.599 kb on + strand, within Dshi_2895at 3050.607 kb on - strand, within Dshi_2895at 3050.685 kb on - strand, within Dshi_2895at 3050.754 kb on + strand, within Dshi_2895at 3050.849 kb on + strand, within Dshi_2895at 3051.011 kb on + strand, within Dshi_2895at 3051.080 kb on + strand, within Dshi_2895at 3051.080 kb on + strand, within Dshi_2895at 3051.262 kb on - strand, within Dshi_2895at 3051.392 kb on + strand, within Dshi_2895at 3051.400 kb on - strand, within Dshi_2895at 3051.413 kb on + strand, within Dshi_2895

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.1 mg/ml
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3,048,156 + -0.6
3,048,264 - -1.5
3,048,264 - -0.6
3,048,336 + -0.4
3,048,352 + Dshi_2893 0.11 +1.3
3,048,357 + Dshi_2893 0.12 -0.6
3,048,441 - Dshi_2893 0.22 -0.7
3,048,480 + Dshi_2893 0.27 -1.0
3,048,488 - Dshi_2893 0.28 +0.5
3,048,715 - Dshi_2893 0.56 +0.3
3,048,890 + Dshi_2893 0.77 -0.8
3,048,898 - Dshi_2893 0.78 -0.4
3,049,122 - -1.2
3,049,131 + +0.2
3,049,148 + +0.4
3,049,153 + -0.2
3,049,153 + -0.9
3,049,360 + Dshi_2894 0.17 +0.7
3,049,452 - Dshi_2894 0.24 -0.2
3,049,452 - Dshi_2894 0.24 +0.3
3,049,529 + Dshi_2894 0.30 +0.8
3,049,555 - Dshi_2894 0.32 +0.9
3,049,810 - Dshi_2894 0.51 -0.8
3,049,976 + Dshi_2894 0.64 +1.4
3,050,004 + Dshi_2894 0.66 +0.1
3,050,010 - Dshi_2894 0.67 -1.2
3,050,324 + -0.4
3,050,332 - -1.3
3,050,387 + -0.1
3,050,387 + +0.2
3,050,436 + -0.5
3,050,491 - -0.1
3,050,528 - -1.0
3,050,599 + Dshi_2895 0.12 -1.4
3,050,607 - Dshi_2895 0.12 -0.2
3,050,685 - Dshi_2895 0.19 +0.2
3,050,754 + Dshi_2895 0.25 -0.1
3,050,849 + Dshi_2895 0.34 +0.1
3,051,011 + Dshi_2895 0.48 -0.4
3,051,080 + Dshi_2895 0.54 -0.7
3,051,080 + Dshi_2895 0.54 -1.2
3,051,262 - Dshi_2895 0.70 -0.7
3,051,392 + Dshi_2895 0.81 -0.3
3,051,400 - Dshi_2895 0.82 -0.2
3,051,413 + Dshi_2895 0.83 -0.4

Or see this region's nucleotide sequence