Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2660

Experiment: m.b. Bacitracin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2659 and Dshi_2660 are separated by 73 nucleotidesDshi_2660 and Dshi_2661 are separated by 48 nucleotidesDshi_2661 and Dshi_2662 are separated by 76 nucleotides Dshi_2659: Dshi_2659 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding (RefSeq), at 2,815,351 to 2,817,726 _2659 Dshi_2660: Dshi_2660 - (2Fe-2S)-binding domain protein (RefSeq), at 2,817,800 to 2,818,288 _2660 Dshi_2661: Dshi_2661 - carbon monoxide dehydrogenase subunit G (RefSeq), at 2,818,337 to 2,818,867 _2661 Dshi_2662: Dshi_2662 - extracellular solute-binding protein family 3 (RefSeq), at 2,818,944 to 2,819,846 _2662 Position (kb) 2817 2818 2819Strain fitness (log2 ratio) -2 -1 0 1at 2817.059 kb on + strand, within Dshi_2659at 2817.059 kb on + strand, within Dshi_2659at 2817.061 kb on + strand, within Dshi_2659at 2817.084 kb on - strand, within Dshi_2659at 2817.128 kb on - strand, within Dshi_2659at 2817.161 kb on - strand, within Dshi_2659at 2817.275 kb on + strand, within Dshi_2659at 2817.275 kb on + strand, within Dshi_2659at 2817.306 kb on - strand, within Dshi_2659at 2817.358 kb on - strand, within Dshi_2659at 2817.368 kb on - strand, within Dshi_2659at 2817.369 kb on - strand, within Dshi_2659at 2817.444 kb on + strand, within Dshi_2659at 2817.580 kb on - strandat 2817.640 kb on - strandat 2817.735 kb on + strandat 2817.751 kb on + strandat 2817.947 kb on - strand, within Dshi_2660at 2818.083 kb on - strand, within Dshi_2660at 2818.097 kb on + strand, within Dshi_2660at 2818.112 kb on + strand, within Dshi_2660at 2818.172 kb on + strand, within Dshi_2660at 2818.208 kb on - strand, within Dshi_2660at 2818.242 kb on - strandat 2818.253 kb on + strandat 2818.401 kb on + strand, within Dshi_2661at 2818.574 kb on - strand, within Dshi_2661at 2818.575 kb on + strand, within Dshi_2661at 2818.612 kb on - strand, within Dshi_2661at 2818.677 kb on - strand, within Dshi_2661at 2818.744 kb on + strand, within Dshi_2661at 2818.752 kb on - strand, within Dshi_2661at 2818.762 kb on + strand, within Dshi_2661at 2818.770 kb on - strand, within Dshi_2661at 2818.832 kb on - strandat 2818.872 kb on - strandat 2818.902 kb on + strandat 2818.906 kb on + strandat 2818.922 kb on + strandat 2818.927 kb on + strandat 2818.972 kb on + strandat 2818.989 kb on - strandat 2818.994 kb on - strandat 2818.994 kb on - strandat 2819.007 kb on + strandat 2819.014 kb on + strandat 2819.015 kb on - strandat 2819.038 kb on + strand, within Dshi_2662at 2819.066 kb on - strand, within Dshi_2662at 2819.157 kb on - strand, within Dshi_2662at 2819.224 kb on - strand, within Dshi_2662at 2819.244 kb on + strand, within Dshi_2662

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.1 mg/ml
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2,817,059 + Dshi_2659 0.72 +0.7
2,817,059 + Dshi_2659 0.72 +0.7
2,817,061 + Dshi_2659 0.72 +0.9
2,817,084 - Dshi_2659 0.73 +0.6
2,817,128 - Dshi_2659 0.75 +0.9
2,817,161 - Dshi_2659 0.76 -0.0
2,817,275 + Dshi_2659 0.81 -0.2
2,817,275 + Dshi_2659 0.81 +0.5
2,817,306 - Dshi_2659 0.82 -0.6
2,817,358 - Dshi_2659 0.84 -0.4
2,817,368 - Dshi_2659 0.85 +0.1
2,817,369 - Dshi_2659 0.85 +0.1
2,817,444 + Dshi_2659 0.88 +0.1
2,817,580 - +0.6
2,817,640 - +0.8
2,817,735 + -0.6
2,817,751 + +0.3
2,817,947 - Dshi_2660 0.30 +0.2
2,818,083 - Dshi_2660 0.58 +0.6
2,818,097 + Dshi_2660 0.61 -1.0
2,818,112 + Dshi_2660 0.64 -2.0
2,818,172 + Dshi_2660 0.76 -0.6
2,818,208 - Dshi_2660 0.83 +0.4
2,818,242 - +0.1
2,818,253 + +1.0
2,818,401 + Dshi_2661 0.12 +0.1
2,818,574 - Dshi_2661 0.45 -0.7
2,818,575 + Dshi_2661 0.45 -0.8
2,818,612 - Dshi_2661 0.52 -1.3
2,818,677 - Dshi_2661 0.64 -0.1
2,818,744 + Dshi_2661 0.77 +0.7
2,818,752 - Dshi_2661 0.78 +0.4
2,818,762 + Dshi_2661 0.80 -0.3
2,818,770 - Dshi_2661 0.82 +1.1
2,818,832 - -0.5
2,818,872 - +0.5
2,818,902 + +1.0
2,818,906 + +0.2
2,818,922 + +0.7
2,818,927 + +0.5
2,818,972 + -0.3
2,818,989 - -0.0
2,818,994 - -0.3
2,818,994 - +0.5
2,819,007 + -0.7
2,819,014 + -0.9
2,819,015 - +0.3
2,819,038 + Dshi_2662 0.10 +0.0
2,819,066 - Dshi_2662 0.14 +0.8
2,819,157 - Dshi_2662 0.24 -0.4
2,819,224 - Dshi_2662 0.31 -0.0
2,819,244 + Dshi_2662 0.33 -0.5

Or see this region's nucleotide sequence