Experiment: m.b. Bacitracin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2479 and Dshi_2480 are separated by 60 nucleotides Dshi_2480 and Dshi_2481 are separated by 91 nucleotides Dshi_2481 and Dshi_2482 are separated by 224 nucleotides Dshi_2482 and Dshi_2483 are separated by 36 nucleotides
Dshi_2479: Dshi_2479 - transcriptional regulator, LysR family (RefSeq), at 2,631,379 to 2,632,347
_2479
Dshi_2480: Dshi_2480 - short-chain dehydrogenase/reductase SDR (RefSeq), at 2,632,408 to 2,633,268
_2480
Dshi_2481: Dshi_2481 - hypothetical protein (RefSeq), at 2,633,360 to 2,633,482
_2481
Dshi_2482: Dshi_2482 - Ethyl tert-butyl ether degradation EthD (RefSeq), at 2,633,707 to 2,634,015
_2482
Dshi_2483: Dshi_2483 - UvrD/REP helicase (RefSeq), at 2,634,052 to 2,636,475
_2483
Position (kb)
2632
2633
2634 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2631.423 kb on + strand at 2631.492 kb on - strand, within Dshi_2479 at 2631.575 kb on - strand, within Dshi_2479 at 2631.643 kb on - strand, within Dshi_2479 at 2631.824 kb on - strand, within Dshi_2479 at 2632.099 kb on - strand, within Dshi_2479 at 2632.102 kb on + strand, within Dshi_2479 at 2632.399 kb on - strand at 2632.421 kb on + strand at 2632.429 kb on - strand at 2632.515 kb on + strand, within Dshi_2480 at 2632.648 kb on - strand, within Dshi_2480 at 2632.651 kb on + strand, within Dshi_2480 at 2632.696 kb on + strand, within Dshi_2480 at 2632.696 kb on + strand, within Dshi_2480 at 2632.696 kb on + strand, within Dshi_2480 at 2632.704 kb on - strand, within Dshi_2480 at 2632.704 kb on - strand, within Dshi_2480 at 2632.704 kb on - strand, within Dshi_2480 at 2632.704 kb on - strand, within Dshi_2480 at 2632.704 kb on - strand, within Dshi_2480 at 2632.741 kb on + strand, within Dshi_2480 at 2632.743 kb on + strand, within Dshi_2480 at 2632.770 kb on - strand, within Dshi_2480 at 2632.851 kb on + strand, within Dshi_2480 at 2632.878 kb on + strand, within Dshi_2480 at 2632.878 kb on + strand, within Dshi_2480 at 2632.878 kb on + strand, within Dshi_2480 at 2632.886 kb on - strand, within Dshi_2480 at 2632.909 kb on - strand, within Dshi_2480 at 2632.963 kb on + strand, within Dshi_2480 at 2632.999 kb on - strand, within Dshi_2480 at 2633.064 kb on - strand, within Dshi_2480 at 2633.076 kb on - strand, within Dshi_2480 at 2633.139 kb on + strand, within Dshi_2480 at 2633.147 kb on - strand, within Dshi_2480 at 2633.147 kb on - strand, within Dshi_2480 at 2633.150 kb on + strand, within Dshi_2480 at 2633.228 kb on + strand at 2633.444 kb on + strand, within Dshi_2481 at 2633.452 kb on - strand, within Dshi_2481 at 2633.495 kb on + strand at 2633.495 kb on + strand at 2633.495 kb on + strand at 2633.503 kb on - strand at 2633.503 kb on - strand at 2633.503 kb on - strand at 2633.503 kb on - strand at 2633.503 kb on - strand at 2633.522 kb on - strand at 2633.522 kb on - strand at 2633.561 kb on + strand at 2633.574 kb on - strand at 2633.702 kb on + strand at 2633.717 kb on - strand at 2633.790 kb on + strand, within Dshi_2482 at 2633.858 kb on + strand, within Dshi_2482 at 2633.873 kb on + strand, within Dshi_2482 at 2633.881 kb on - strand, within Dshi_2482 at 2633.890 kb on + strand, within Dshi_2482 at 2633.890 kb on + strand, within Dshi_2482 at 2633.941 kb on + strand, within Dshi_2482 at 2633.977 kb on + strand, within Dshi_2482 at 2633.985 kb on - strand at 2634.066 kb on + strand at 2634.116 kb on - strand at 2634.267 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.1 mg/ml remove 2,631,423 + -0.5 2,631,492 - Dshi_2479 0.12 +0.3 2,631,575 - Dshi_2479 0.20 -0.5 2,631,643 - Dshi_2479 0.27 +0.1 2,631,824 - Dshi_2479 0.46 +0.1 2,632,099 - Dshi_2479 0.74 +0.2 2,632,102 + Dshi_2479 0.75 -0.0 2,632,399 - -0.7 2,632,421 + +1.0 2,632,429 - -0.0 2,632,515 + Dshi_2480 0.12 -0.1 2,632,648 - Dshi_2480 0.28 +2.3 2,632,651 + Dshi_2480 0.28 -1.0 2,632,696 + Dshi_2480 0.33 -0.7 2,632,696 + Dshi_2480 0.33 -0.7 2,632,696 + Dshi_2480 0.33 -0.6 2,632,704 - Dshi_2480 0.34 -0.2 2,632,704 - Dshi_2480 0.34 -2.5 2,632,704 - Dshi_2480 0.34 -0.3 2,632,704 - Dshi_2480 0.34 +0.1 2,632,704 - Dshi_2480 0.34 +0.3 2,632,741 + Dshi_2480 0.39 -0.4 2,632,743 + Dshi_2480 0.39 -0.3 2,632,770 - Dshi_2480 0.42 -0.9 2,632,851 + Dshi_2480 0.51 -0.8 2,632,878 + Dshi_2480 0.55 -0.5 2,632,878 + Dshi_2480 0.55 -0.2 2,632,878 + Dshi_2480 0.55 +1.1 2,632,886 - Dshi_2480 0.56 -0.7 2,632,909 - Dshi_2480 0.58 -0.2 2,632,963 + Dshi_2480 0.64 -0.3 2,632,999 - Dshi_2480 0.69 +0.2 2,633,064 - Dshi_2480 0.76 -1.0 2,633,076 - Dshi_2480 0.78 -0.5 2,633,139 + Dshi_2480 0.85 -2.0 2,633,147 - Dshi_2480 0.86 +0.5 2,633,147 - Dshi_2480 0.86 -1.3 2,633,150 + Dshi_2480 0.86 +0.1 2,633,228 + +0.5 2,633,444 + Dshi_2481 0.68 -0.6 2,633,452 - Dshi_2481 0.75 -0.6 2,633,495 + -0.4 2,633,495 + +0.3 2,633,495 + +0.2 2,633,503 - +0.3 2,633,503 - +0.1 2,633,503 - -1.0 2,633,503 - -1.0 2,633,503 - -0.7 2,633,522 - -0.6 2,633,522 - +1.9 2,633,561 + -0.4 2,633,574 - -0.1 2,633,702 + -0.8 2,633,717 - +0.4 2,633,790 + Dshi_2482 0.27 +0.7 2,633,858 + Dshi_2482 0.49 -0.3 2,633,873 + Dshi_2482 0.54 -0.1 2,633,881 - Dshi_2482 0.56 -0.6 2,633,890 + Dshi_2482 0.59 +0.3 2,633,890 + Dshi_2482 0.59 -0.9 2,633,941 + Dshi_2482 0.76 -0.2 2,633,977 + Dshi_2482 0.87 -0.0 2,633,985 - -1.6 2,634,066 + +0.2 2,634,116 - -0.6 2,634,267 - +0.1
Or see this region's nucleotide sequence