Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2314

Experiment: m.b. Bacitracin 0.1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_R0043 and Dshi_2313 are separated by 60 nucleotidesDshi_2313 and Dshi_2314 overlap by 4 nucleotidesDshi_2314 and Dshi_2315 are separated by 52 nucleotides Dshi_R0043: Dshi_R0043 - tRNA-Ser (RefSeq), at 2,444,564 to 2,444,653 _R0043 Dshi_2313: Dshi_2313 - Threonyl/alanyl tRNA synthetase SAD (RefSeq), at 2,444,714 to 2,445,433 _2313 Dshi_2314: Dshi_2314 - Pyridoxal-5'-phosphate-dependent protein beta subunit (RefSeq), at 2,445,430 to 2,446,467 _2314 Dshi_2315: Dshi_2315 - NUDIX hydrolase (RefSeq), at 2,446,520 to 2,447,656 _2315 Position (kb) 2445 2446 2447Strain fitness (log2 ratio) -2 -1 0 1at 2444.435 kb on - strandat 2444.446 kb on - strandat 2444.495 kb on - strandat 2444.500 kb on - strandat 2444.501 kb on - strandat 2444.700 kb on + strandat 2444.797 kb on - strand, within Dshi_2313at 2444.812 kb on - strand, within Dshi_2313at 2444.828 kb on - strand, within Dshi_2313at 2444.887 kb on - strand, within Dshi_2313at 2444.910 kb on + strand, within Dshi_2313at 2444.918 kb on - strand, within Dshi_2313at 2444.918 kb on - strand, within Dshi_2313at 2445.031 kb on + strand, within Dshi_2313at 2445.124 kb on - strand, within Dshi_2313at 2445.124 kb on - strand, within Dshi_2313at 2445.161 kb on + strand, within Dshi_2313at 2445.180 kb on - strand, within Dshi_2313at 2445.209 kb on - strand, within Dshi_2313at 2445.442 kb on + strandat 2445.482 kb on - strandat 2446.477 kb on + strandat 2446.544 kb on + strandat 2446.552 kb on - strandat 2446.558 kb on + strandat 2446.731 kb on - strand, within Dshi_2315at 2446.731 kb on - strand, within Dshi_2315at 2446.731 kb on - strand, within Dshi_2315at 2446.761 kb on + strand, within Dshi_2315at 2446.908 kb on - strand, within Dshi_2315at 2447.010 kb on + strand, within Dshi_2315at 2447.122 kb on + strand, within Dshi_2315at 2447.159 kb on - strand, within Dshi_2315at 2447.307 kb on - strand, within Dshi_2315at 2447.323 kb on - strand, within Dshi_2315at 2447.333 kb on - strand, within Dshi_2315

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.1 mg/ml
remove
2,444,435 - +1.5
2,444,446 - -0.1
2,444,495 - +0.3
2,444,500 - -0.2
2,444,501 - -0.6
2,444,700 + -1.0
2,444,797 - Dshi_2313 0.12 -1.3
2,444,812 - Dshi_2313 0.14 -0.0
2,444,828 - Dshi_2313 0.16 +0.0
2,444,887 - Dshi_2313 0.24 +0.3
2,444,910 + Dshi_2313 0.27 -0.9
2,444,918 - Dshi_2313 0.28 -0.4
2,444,918 - Dshi_2313 0.28 -0.0
2,445,031 + Dshi_2313 0.44 -0.9
2,445,124 - Dshi_2313 0.57 -0.5
2,445,124 - Dshi_2313 0.57 +0.8
2,445,161 + Dshi_2313 0.62 -0.6
2,445,180 - Dshi_2313 0.65 -1.3
2,445,209 - Dshi_2313 0.69 -0.5
2,445,442 + -1.1
2,445,482 - -0.2
2,446,477 + +0.4
2,446,544 + -2.1
2,446,552 - -0.3
2,446,558 + -1.7
2,446,731 - Dshi_2315 0.19 +0.5
2,446,731 - Dshi_2315 0.19 +0.0
2,446,731 - Dshi_2315 0.19 +0.0
2,446,761 + Dshi_2315 0.21 -0.8
2,446,908 - Dshi_2315 0.34 -0.3
2,447,010 + Dshi_2315 0.43 -1.3
2,447,122 + Dshi_2315 0.53 -0.9
2,447,159 - Dshi_2315 0.56 +0.0
2,447,307 - Dshi_2315 0.69 -0.2
2,447,323 - Dshi_2315 0.71 +1.5
2,447,333 - Dshi_2315 0.72 -0.5

Or see this region's nucleotide sequence