Experiment: m.b. Bacitracin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2160 and Dshi_2161 are separated by 14 nucleotides Dshi_2161 and Dshi_2162 are separated by 367 nucleotides
Dshi_2160: Dshi_2160 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (RefSeq), at 2,289,232 to 2,290,494
_2160
Dshi_2161: Dshi_2161 - serine O-acetyltransferase (RefSeq), at 2,290,509 to 2,291,318
_2161
Dshi_2162: Dshi_2162 - hypothetical protein (RefSeq), at 2,291,686 to 2,292,393
_2162
Position (kb)
2290
2291
2292 Strain fitness (log2 ratio)
-2
-1
0
1 at 2289.542 kb on + strand, within Dshi_2160 at 2289.631 kb on + strand, within Dshi_2160 at 2289.631 kb on + strand, within Dshi_2160 at 2289.631 kb on + strand, within Dshi_2160 at 2289.747 kb on - strand, within Dshi_2160 at 2289.802 kb on - strand, within Dshi_2160 at 2289.981 kb on + strand, within Dshi_2160 at 2290.023 kb on - strand, within Dshi_2160 at 2290.024 kb on - strand, within Dshi_2160 at 2290.032 kb on + strand, within Dshi_2160 at 2290.042 kb on - strand, within Dshi_2160 at 2290.054 kb on - strand, within Dshi_2160 at 2290.054 kb on - strand, within Dshi_2160 at 2290.128 kb on + strand, within Dshi_2160 at 2290.197 kb on - strand, within Dshi_2160 at 2290.216 kb on - strand, within Dshi_2160 at 2290.288 kb on + strand, within Dshi_2160 at 2290.558 kb on + strand at 2291.410 kb on + strand at 2291.456 kb on - strand at 2291.483 kb on + strand at 2291.547 kb on - strand at 2291.547 kb on - strand at 2291.635 kb on + strand at 2291.638 kb on - strand at 2291.643 kb on - strand at 2291.665 kb on + strand at 2291.665 kb on + strand at 2291.673 kb on - strand at 2291.673 kb on - strand at 2291.689 kb on + strand at 2291.773 kb on - strand, within Dshi_2162 at 2291.887 kb on - strand, within Dshi_2162 at 2291.897 kb on - strand, within Dshi_2162 at 2291.919 kb on + strand, within Dshi_2162 at 2291.942 kb on - strand, within Dshi_2162 at 2291.948 kb on + strand, within Dshi_2162 at 2291.971 kb on - strand, within Dshi_2162 at 2291.971 kb on - strand, within Dshi_2162 at 2291.980 kb on + strand, within Dshi_2162 at 2291.988 kb on - strand, within Dshi_2162 at 2291.988 kb on - strand, within Dshi_2162 at 2291.990 kb on - strand, within Dshi_2162 at 2291.998 kb on - strand, within Dshi_2162 at 2292.059 kb on - strand, within Dshi_2162 at 2292.224 kb on + strand, within Dshi_2162 at 2292.232 kb on - strand, within Dshi_2162 at 2292.263 kb on + strand, within Dshi_2162
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.1 mg/ml remove 2,289,542 + Dshi_2160 0.25 -1.8 2,289,631 + Dshi_2160 0.32 -0.5 2,289,631 + Dshi_2160 0.32 -1.3 2,289,631 + Dshi_2160 0.32 -0.2 2,289,747 - Dshi_2160 0.41 -0.6 2,289,802 - Dshi_2160 0.45 -2.0 2,289,981 + Dshi_2160 0.59 -0.8 2,290,023 - Dshi_2160 0.63 -0.7 2,290,024 - Dshi_2160 0.63 +0.2 2,290,032 + Dshi_2160 0.63 -0.1 2,290,042 - Dshi_2160 0.64 -0.2 2,290,054 - Dshi_2160 0.65 -0.8 2,290,054 - Dshi_2160 0.65 -0.6 2,290,128 + Dshi_2160 0.71 +1.5 2,290,197 - Dshi_2160 0.76 -1.4 2,290,216 - Dshi_2160 0.78 -1.6 2,290,288 + Dshi_2160 0.84 -0.7 2,290,558 + -0.4 2,291,410 + +0.3 2,291,456 - +0.0 2,291,483 + -0.8 2,291,547 - +0.1 2,291,547 - -0.5 2,291,635 + -0.1 2,291,638 - +0.5 2,291,643 - -1.6 2,291,665 + -0.2 2,291,665 + -1.2 2,291,673 - +0.4 2,291,673 - -0.3 2,291,689 + +0.6 2,291,773 - Dshi_2162 0.12 -0.8 2,291,887 - Dshi_2162 0.28 +0.3 2,291,897 - Dshi_2162 0.30 -0.1 2,291,919 + Dshi_2162 0.33 -0.1 2,291,942 - Dshi_2162 0.36 +0.4 2,291,948 + Dshi_2162 0.37 -0.8 2,291,971 - Dshi_2162 0.40 -0.3 2,291,971 - Dshi_2162 0.40 -0.4 2,291,980 + Dshi_2162 0.42 +0.9 2,291,988 - Dshi_2162 0.43 -0.8 2,291,988 - Dshi_2162 0.43 +0.1 2,291,990 - Dshi_2162 0.43 -0.8 2,291,998 - Dshi_2162 0.44 -0.6 2,292,059 - Dshi_2162 0.53 -0.4 2,292,224 + Dshi_2162 0.76 -0.2 2,292,232 - Dshi_2162 0.77 -0.4 2,292,263 + Dshi_2162 0.81 -0.7
Or see this region's nucleotide sequence