Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0887

Experiment: m.b. Bacitracin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0886 and Dshi_0887 are separated by 199 nucleotidesDshi_0887 and Dshi_0888 are separated by 7 nucleotidesDshi_0888 and Dshi_0889 are separated by 14 nucleotides Dshi_0886: Dshi_0886 - transcriptional regulator, IclR family (RefSeq), at 901,082 to 901,924 _0886 Dshi_0887: Dshi_0887 - Serine--glyoxylate transaminase (RefSeq), at 902,124 to 903,314 _0887 Dshi_0888: Dshi_0888 - Pyridoxal-5'-phosphate-dependent protein beta subunit (RefSeq), at 903,322 to 904,296 _0888 Dshi_0889: Dshi_0889 - alanine racemase domain protein (RefSeq), at 904,311 to 905,474 _0889 Position (kb) 902 903 904Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 901.262 kb on + strand, within Dshi_0886at 901.270 kb on - strand, within Dshi_0886at 901.347 kb on - strand, within Dshi_0886at 901.347 kb on - strand, within Dshi_0886at 901.349 kb on + strand, within Dshi_0886at 901.358 kb on - strand, within Dshi_0886at 901.373 kb on + strand, within Dshi_0886at 901.513 kb on - strand, within Dshi_0886at 901.514 kb on - strand, within Dshi_0886at 901.514 kb on - strand, within Dshi_0886at 901.514 kb on - strand, within Dshi_0886at 901.514 kb on - strand, within Dshi_0886at 901.638 kb on - strand, within Dshi_0886at 901.819 kb on + strand, within Dshi_0886at 901.829 kb on - strand, within Dshi_0886at 901.843 kb on + strandat 901.846 kb on - strandat 901.846 kb on - strandat 901.892 kb on + strandat 901.905 kb on + strandat 902.106 kb on + strandat 902.112 kb on - strandat 902.276 kb on - strand, within Dshi_0887at 902.283 kb on - strand, within Dshi_0887at 902.410 kb on + strand, within Dshi_0887at 902.503 kb on - strand, within Dshi_0887at 902.503 kb on - strand, within Dshi_0887at 902.509 kb on - strand, within Dshi_0887at 902.605 kb on - strand, within Dshi_0887at 902.633 kb on - strand, within Dshi_0887at 902.639 kb on - strand, within Dshi_0887at 902.891 kb on + strand, within Dshi_0887at 902.938 kb on + strand, within Dshi_0887at 902.983 kb on + strand, within Dshi_0887at 902.985 kb on - strand, within Dshi_0887at 903.011 kb on + strand, within Dshi_0887at 903.074 kb on - strand, within Dshi_0887at 903.109 kb on + strand, within Dshi_0887at 903.133 kb on + strand, within Dshi_0887at 903.180 kb on - strand, within Dshi_0887at 903.242 kb on + strandat 903.242 kb on + strandat 903.252 kb on - strandat 903.277 kb on + strandat 903.277 kb on + strandat 903.288 kb on + strandat 903.307 kb on - strandat 903.387 kb on + strandat 903.395 kb on - strandat 903.405 kb on + strandat 903.410 kb on + strandat 903.410 kb on + strandat 903.414 kb on + strandat 903.428 kb on - strand, within Dshi_0888at 903.444 kb on + strand, within Dshi_0888at 903.536 kb on + strand, within Dshi_0888at 903.544 kb on - strand, within Dshi_0888at 903.581 kb on + strand, within Dshi_0888at 903.756 kb on - strand, within Dshi_0888at 903.830 kb on + strand, within Dshi_0888at 903.891 kb on + strand, within Dshi_0888at 903.913 kb on - strand, within Dshi_0888at 903.942 kb on - strand, within Dshi_0888at 903.953 kb on + strand, within Dshi_0888at 903.999 kb on + strand, within Dshi_0888at 904.056 kb on - strand, within Dshi_0888at 904.099 kb on - strand, within Dshi_0888at 904.099 kb on - strand, within Dshi_0888at 904.099 kb on - strand, within Dshi_0888at 904.173 kb on + strand, within Dshi_0888at 904.186 kb on - strand, within Dshi_0888at 904.186 kb on - strand, within Dshi_0888at 904.199 kb on - strandat 904.250 kb on - strandat 904.290 kb on + strandat 904.291 kb on + strandat 904.295 kb on + strandat 904.299 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.1 mg/ml
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901,262 + Dshi_0886 0.21 +1.0
901,270 - Dshi_0886 0.22 +0.5
901,347 - Dshi_0886 0.31 -1.3
901,347 - Dshi_0886 0.31 -0.3
901,349 + Dshi_0886 0.32 +1.4
901,358 - Dshi_0886 0.33 +0.2
901,373 + Dshi_0886 0.35 -2.8
901,513 - Dshi_0886 0.51 -0.9
901,514 - Dshi_0886 0.51 +0.6
901,514 - Dshi_0886 0.51 +0.3
901,514 - Dshi_0886 0.51 +0.3
901,514 - Dshi_0886 0.51 +1.2
901,638 - Dshi_0886 0.66 +0.0
901,819 + Dshi_0886 0.87 -0.2
901,829 - Dshi_0886 0.89 +0.8
901,843 + +0.8
901,846 - +0.2
901,846 - -0.3
901,892 + -0.3
901,905 + -0.9
902,106 + +0.3
902,112 - -0.1
902,276 - Dshi_0887 0.13 +0.4
902,283 - Dshi_0887 0.13 -0.8
902,410 + Dshi_0887 0.24 -0.0
902,503 - Dshi_0887 0.32 +0.9
902,503 - Dshi_0887 0.32 +0.5
902,509 - Dshi_0887 0.32 +0.0
902,605 - Dshi_0887 0.40 +1.5
902,633 - Dshi_0887 0.43 +0.3
902,639 - Dshi_0887 0.43 +1.0
902,891 + Dshi_0887 0.64 -0.2
902,938 + Dshi_0887 0.68 +0.1
902,983 + Dshi_0887 0.72 -0.1
902,985 - Dshi_0887 0.72 -1.7
903,011 + Dshi_0887 0.74 -0.2
903,074 - Dshi_0887 0.80 +0.5
903,109 + Dshi_0887 0.83 -0.3
903,133 + Dshi_0887 0.85 +0.3
903,180 - Dshi_0887 0.89 -0.1
903,242 + +1.4
903,242 + -0.2
903,252 - -0.4
903,277 + +0.0
903,277 + +0.2
903,288 + -1.8
903,307 - +0.5
903,387 + +0.5
903,395 - -0.1
903,405 + +0.5
903,410 + +0.3
903,410 + +0.5
903,414 + +0.2
903,428 - Dshi_0888 0.11 -0.1
903,444 + Dshi_0888 0.13 -0.1
903,536 + Dshi_0888 0.22 -0.0
903,544 - Dshi_0888 0.23 +0.1
903,581 + Dshi_0888 0.27 +0.3
903,756 - Dshi_0888 0.45 -0.6
903,830 + Dshi_0888 0.52 +0.1
903,891 + Dshi_0888 0.58 -0.8
903,913 - Dshi_0888 0.61 +0.7
903,942 - Dshi_0888 0.64 +1.0
903,953 + Dshi_0888 0.65 +0.9
903,999 + Dshi_0888 0.69 -0.5
904,056 - Dshi_0888 0.75 -0.2
904,099 - Dshi_0888 0.80 -0.4
904,099 - Dshi_0888 0.80 -0.2
904,099 - Dshi_0888 0.80 +0.8
904,173 + Dshi_0888 0.87 +0.3
904,186 - Dshi_0888 0.89 -0.6
904,186 - Dshi_0888 0.89 -1.1
904,199 - +0.6
904,250 - -0.1
904,290 + -0.3
904,291 + +2.2
904,295 + -0.1
904,299 - +1.0

Or see this region's nucleotide sequence