Experiment: m.b. Bacitracin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0506 and Dshi_0507 are separated by 159 nucleotides Dshi_0507 and Dshi_0508 are separated by 183 nucleotides
Dshi_0506: Dshi_0506 - formate dehydrogenase, gamma subunit (RefSeq), at 490,899 to 491,927
_0506
Dshi_0507: Dshi_0507 - MRP-like protein (ATP/GTP-binding protein) (RefSeq), at 492,087 to 493,133
_0507
Dshi_0508: Dshi_0508 - cytochrome c class I (RefSeq), at 493,317 to 494,531
_0508
Position (kb) 492
493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 491.102 kb on + strand, within Dshi_0506 at 491.123 kb on + strand, within Dshi_0506 at 491.140 kb on - strand, within Dshi_0506 at 491.150 kb on + strand, within Dshi_0506 at 491.158 kb on - strand, within Dshi_0506 at 491.158 kb on - strand, within Dshi_0506 at 491.184 kb on - strand, within Dshi_0506 at 491.263 kb on + strand, within Dshi_0506 at 491.294 kb on - strand, within Dshi_0506 at 491.305 kb on + strand, within Dshi_0506 at 491.344 kb on + strand, within Dshi_0506 at 491.352 kb on - strand, within Dshi_0506 at 491.352 kb on - strand, within Dshi_0506 at 491.372 kb on + strand, within Dshi_0506 at 491.373 kb on + strand, within Dshi_0506 at 491.373 kb on + strand, within Dshi_0506 at 491.373 kb on + strand, within Dshi_0506 at 491.378 kb on + strand, within Dshi_0506 at 491.380 kb on - strand, within Dshi_0506 at 491.383 kb on + strand, within Dshi_0506 at 491.458 kb on + strand, within Dshi_0506 at 491.468 kb on + strand, within Dshi_0506 at 491.492 kb on - strand, within Dshi_0506 at 491.537 kb on - strand, within Dshi_0506 at 491.570 kb on - strand, within Dshi_0506 at 491.629 kb on + strand, within Dshi_0506 at 491.639 kb on + strand, within Dshi_0506 at 491.647 kb on - strand, within Dshi_0506 at 491.658 kb on - strand, within Dshi_0506 at 491.733 kb on + strand, within Dshi_0506 at 491.733 kb on + strand, within Dshi_0506 at 491.767 kb on - strand, within Dshi_0506 at 491.791 kb on + strand, within Dshi_0506 at 491.817 kb on + strand, within Dshi_0506 at 491.820 kb on + strand, within Dshi_0506 at 491.828 kb on - strand at 491.883 kb on + strand at 491.937 kb on - strand at 492.050 kb on + strand at 492.078 kb on + strand at 492.087 kb on - strand at 492.130 kb on + strand at 492.335 kb on + strand, within Dshi_0507 at 492.399 kb on + strand, within Dshi_0507 at 492.480 kb on - strand, within Dshi_0507 at 492.602 kb on + strand, within Dshi_0507 at 492.610 kb on - strand, within Dshi_0507 at 492.675 kb on - strand, within Dshi_0507 at 492.776 kb on - strand, within Dshi_0507 at 492.777 kb on - strand, within Dshi_0507 at 492.820 kb on - strand, within Dshi_0507 at 492.950 kb on + strand, within Dshi_0507 at 492.985 kb on - strand, within Dshi_0507 at 492.998 kb on + strand, within Dshi_0507 at 493.021 kb on + strand, within Dshi_0507 at 493.043 kb on + strand at 493.066 kb on - strand at 493.215 kb on - strand at 493.243 kb on - strand at 493.335 kb on - strand at 493.359 kb on + strand at 493.418 kb on + strand at 493.597 kb on + strand, within Dshi_0508 at 493.615 kb on - strand, within Dshi_0508 at 493.720 kb on + strand, within Dshi_0508 at 493.787 kb on - strand, within Dshi_0508 at 493.800 kb on + strand, within Dshi_0508 at 493.831 kb on + strand, within Dshi_0508 at 493.893 kb on + strand, within Dshi_0508 at 493.901 kb on - strand, within Dshi_0508 at 493.965 kb on + strand, within Dshi_0508 at 494.022 kb on + strand, within Dshi_0508 at 494.058 kb on - strand, within Dshi_0508 at 494.067 kb on - strand, within Dshi_0508 at 494.103 kb on - strand, within Dshi_0508
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.1 mg/ml remove 491,102 + Dshi_0506 0.20 +0.0 491,123 + Dshi_0506 0.22 +0.9 491,140 - Dshi_0506 0.23 -0.3 491,150 + Dshi_0506 0.24 +0.5 491,158 - Dshi_0506 0.25 -1.3 491,158 - Dshi_0506 0.25 +2.0 491,184 - Dshi_0506 0.28 -0.5 491,263 + Dshi_0506 0.35 +0.2 491,294 - Dshi_0506 0.38 -1.5 491,305 + Dshi_0506 0.39 -0.2 491,344 + Dshi_0506 0.43 -0.1 491,352 - Dshi_0506 0.44 +0.3 491,352 - Dshi_0506 0.44 -1.1 491,372 + Dshi_0506 0.46 -0.0 491,373 + Dshi_0506 0.46 -0.4 491,373 + Dshi_0506 0.46 -0.8 491,373 + Dshi_0506 0.46 +0.3 491,378 + Dshi_0506 0.47 -0.7 491,380 - Dshi_0506 0.47 -0.1 491,383 + Dshi_0506 0.47 +1.7 491,458 + Dshi_0506 0.54 -0.5 491,468 + Dshi_0506 0.55 +0.1 491,492 - Dshi_0506 0.58 +1.3 491,537 - Dshi_0506 0.62 +0.3 491,570 - Dshi_0506 0.65 -0.1 491,629 + Dshi_0506 0.71 -0.6 491,639 + Dshi_0506 0.72 +0.5 491,647 - Dshi_0506 0.73 +0.3 491,658 - Dshi_0506 0.74 +0.5 491,733 + Dshi_0506 0.81 -0.3 491,733 + Dshi_0506 0.81 -0.8 491,767 - Dshi_0506 0.84 -0.1 491,791 + Dshi_0506 0.87 +1.0 491,817 + Dshi_0506 0.89 +1.6 491,820 + Dshi_0506 0.90 -0.4 491,828 - -0.9 491,883 + +0.9 491,937 - -0.0 492,050 + -1.6 492,078 + -1.0 492,087 - +0.1 492,130 + -0.2 492,335 + Dshi_0507 0.24 -0.3 492,399 + Dshi_0507 0.30 +0.5 492,480 - Dshi_0507 0.38 +0.3 492,602 + Dshi_0507 0.49 +0.1 492,610 - Dshi_0507 0.50 -0.1 492,675 - Dshi_0507 0.56 +1.3 492,776 - Dshi_0507 0.66 +0.8 492,777 - Dshi_0507 0.66 -0.5 492,820 - Dshi_0507 0.70 -0.5 492,950 + Dshi_0507 0.82 +0.8 492,985 - Dshi_0507 0.86 -0.5 492,998 + Dshi_0507 0.87 +0.2 493,021 + Dshi_0507 0.89 +0.6 493,043 + -2.6 493,066 - -0.5 493,215 - -2.8 493,243 - -1.5 493,335 - -0.7 493,359 + -0.4 493,418 + +1.1 493,597 + Dshi_0508 0.23 -0.5 493,615 - Dshi_0508 0.25 -1.0 493,720 + Dshi_0508 0.33 +0.2 493,787 - Dshi_0508 0.39 -1.4 493,800 + Dshi_0508 0.40 -0.2 493,831 + Dshi_0508 0.42 -0.0 493,893 + Dshi_0508 0.47 +0.3 493,901 - Dshi_0508 0.48 -0.4 493,965 + Dshi_0508 0.53 -0.4 494,022 + Dshi_0508 0.58 +0.5 494,058 - Dshi_0508 0.61 -0.4 494,067 - Dshi_0508 0.62 -0.4 494,103 - Dshi_0508 0.65 +0.4
Or see this region's nucleotide sequence