Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0495

Experiment: m.b. Bacitracin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0494 and Dshi_0495 are separated by 58 nucleotidesDshi_0495 and Dshi_0496 are separated by 206 nucleotides Dshi_0494: Dshi_0494 - NnrS family protein (RefSeq), at 478,748 to 480,028 _0494 Dshi_0495: Dshi_0495 - hypothetical protein (RefSeq), at 480,087 to 480,497 _0495 Dshi_0496: Dshi_0496 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 480,704 to 482,722 _0496 Position (kb) 480 481Strain fitness (log2 ratio) -2 -1 0 1at 479.244 kb on - strand, within Dshi_0494at 479.244 kb on - strand, within Dshi_0494at 479.326 kb on - strand, within Dshi_0494at 479.337 kb on + strand, within Dshi_0494at 479.414 kb on + strand, within Dshi_0494at 479.468 kb on + strand, within Dshi_0494at 479.492 kb on + strand, within Dshi_0494at 479.500 kb on - strand, within Dshi_0494at 479.500 kb on - strand, within Dshi_0494at 479.526 kb on + strand, within Dshi_0494at 479.624 kb on - strand, within Dshi_0494at 479.651 kb on + strand, within Dshi_0494at 479.668 kb on + strand, within Dshi_0494at 479.714 kb on - strand, within Dshi_0494at 479.723 kb on + strand, within Dshi_0494at 479.853 kb on + strand, within Dshi_0494at 479.932 kb on + strandat 479.947 kb on + strandat 479.987 kb on - strandat 480.109 kb on - strandat 480.139 kb on + strand, within Dshi_0495at 480.216 kb on + strand, within Dshi_0495at 480.264 kb on + strand, within Dshi_0495at 480.336 kb on + strand, within Dshi_0495at 480.393 kb on + strand, within Dshi_0495at 480.393 kb on + strand, within Dshi_0495at 480.451 kb on + strand, within Dshi_0495at 480.456 kb on + strand, within Dshi_0495at 480.478 kb on + strandat 480.478 kb on - strandat 480.486 kb on - strandat 480.497 kb on + strandat 480.497 kb on + strandat 480.531 kb on + strandat 480.626 kb on - strandat 480.658 kb on + strandat 480.660 kb on + strandat 480.668 kb on + strandat 480.668 kb on - strandat 480.676 kb on - strandat 480.676 kb on - strandat 480.676 kb on - strandat 480.689 kb on - strandat 480.697 kb on - strandat 480.720 kb on - strandat 480.773 kb on + strandat 480.829 kb on - strandat 480.836 kb on - strandat 480.863 kb on + strandat 480.888 kb on - strandat 480.888 kb on - strandat 480.892 kb on - strandat 480.920 kb on + strand, within Dshi_0496at 480.988 kb on - strand, within Dshi_0496at 481.038 kb on + strand, within Dshi_0496at 481.046 kb on + strand, within Dshi_0496at 481.084 kb on + strand, within Dshi_0496at 481.092 kb on - strand, within Dshi_0496at 481.123 kb on + strand, within Dshi_0496at 481.134 kb on + strand, within Dshi_0496at 481.134 kb on + strand, within Dshi_0496at 481.140 kb on + strand, within Dshi_0496at 481.142 kb on - strand, within Dshi_0496at 481.142 kb on - strand, within Dshi_0496at 481.165 kb on - strand, within Dshi_0496at 481.181 kb on + strand, within Dshi_0496at 481.189 kb on - strand, within Dshi_0496at 481.295 kb on + strand, within Dshi_0496at 481.296 kb on - strand, within Dshi_0496at 481.320 kb on + strand, within Dshi_0496at 481.325 kb on - strand, within Dshi_0496at 481.334 kb on + strand, within Dshi_0496at 481.353 kb on - strand, within Dshi_0496at 481.378 kb on + strand, within Dshi_0496at 481.378 kb on + strand, within Dshi_0496at 481.386 kb on - strand, within Dshi_0496at 481.390 kb on - strand, within Dshi_0496at 481.413 kb on + strand, within Dshi_0496at 481.428 kb on + strand, within Dshi_0496at 481.461 kb on + strand, within Dshi_0496at 481.461 kb on + strand, within Dshi_0496at 481.469 kb on - strand, within Dshi_0496

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.1 mg/ml
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479,244 - Dshi_0494 0.39 +0.3
479,244 - Dshi_0494 0.39 -1.3
479,326 - Dshi_0494 0.45 +0.7
479,337 + Dshi_0494 0.46 +0.7
479,414 + Dshi_0494 0.52 -1.5
479,468 + Dshi_0494 0.56 -1.3
479,492 + Dshi_0494 0.58 -0.2
479,500 - Dshi_0494 0.59 +0.1
479,500 - Dshi_0494 0.59 +0.2
479,526 + Dshi_0494 0.61 +0.3
479,624 - Dshi_0494 0.68 -0.3
479,651 + Dshi_0494 0.70 +0.1
479,668 + Dshi_0494 0.72 +0.6
479,714 - Dshi_0494 0.75 -0.7
479,723 + Dshi_0494 0.76 +0.7
479,853 + Dshi_0494 0.86 -0.1
479,932 + +0.0
479,947 + +0.3
479,987 - -0.4
480,109 - +0.9
480,139 + Dshi_0495 0.13 -1.9
480,216 + Dshi_0495 0.31 -0.9
480,264 + Dshi_0495 0.43 -0.4
480,336 + Dshi_0495 0.61 +0.1
480,393 + Dshi_0495 0.74 -1.3
480,393 + Dshi_0495 0.74 +0.3
480,451 + Dshi_0495 0.89 -1.7
480,456 + Dshi_0495 0.90 -0.3
480,478 + -0.1
480,478 - +0.4
480,486 - +0.3
480,497 + +0.6
480,497 + -0.2
480,531 + +0.2
480,626 - -0.0
480,658 + -0.0
480,660 + -0.7
480,668 + -0.6
480,668 - -0.5
480,676 - +0.2
480,676 - -1.0
480,676 - +0.2
480,689 - -0.1
480,697 - +0.8
480,720 - +0.1
480,773 + +0.4
480,829 - -0.3
480,836 - +1.6
480,863 + -0.7
480,888 - +0.5
480,888 - -0.3
480,892 - -1.3
480,920 + Dshi_0496 0.11 +0.8
480,988 - Dshi_0496 0.14 -0.2
481,038 + Dshi_0496 0.17 -0.2
481,046 + Dshi_0496 0.17 -0.3
481,084 + Dshi_0496 0.19 +0.3
481,092 - Dshi_0496 0.19 +1.2
481,123 + Dshi_0496 0.21 +0.0
481,134 + Dshi_0496 0.21 -0.2
481,134 + Dshi_0496 0.21 +0.2
481,140 + Dshi_0496 0.22 -0.7
481,142 - Dshi_0496 0.22 -0.3
481,142 - Dshi_0496 0.22 -0.5
481,165 - Dshi_0496 0.23 -0.6
481,181 + Dshi_0496 0.24 -0.0
481,189 - Dshi_0496 0.24 +0.4
481,295 + Dshi_0496 0.29 +0.8
481,296 - Dshi_0496 0.29 -1.2
481,320 + Dshi_0496 0.31 +1.4
481,325 - Dshi_0496 0.31 -0.0
481,334 + Dshi_0496 0.31 -0.1
481,353 - Dshi_0496 0.32 -1.7
481,378 + Dshi_0496 0.33 -1.2
481,378 + Dshi_0496 0.33 +0.6
481,386 - Dshi_0496 0.34 +0.1
481,390 - Dshi_0496 0.34 +0.2
481,413 + Dshi_0496 0.35 +1.0
481,428 + Dshi_0496 0.36 +0.7
481,461 + Dshi_0496 0.37 -0.3
481,461 + Dshi_0496 0.37 -1.6
481,469 - Dshi_0496 0.38 -1.4

Or see this region's nucleotide sequence