Experiment: MoYLS4 with FCCP 10uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0967 and DVU0968 overlap by 4 nucleotides DVU0968 and DVU0969 are separated by 247 nucleotides DVU0969 and DVU0970 are separated by 2 nucleotides
DVU0967: DVU0967 - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 1,064,266 to 1,065,279
DVU0967
DVU0968: DVU0968 - amino acid ABC transporter, ATP-binding protein (TIGR), at 1,065,276 to 1,066,016
DVU0968
DVU0969: DVU0969 - efflux protein, LysE family (TIGR), at 1,066,264 to 1,067,010
DVU0969
DVU0970: DVU0970 - lipoprotein, putative (TIGR), at 1,067,013 to 1,067,552
DVU0970
Position (kb)
1065
1066
1067 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1064.282 kb on - strand at 1064.282 kb on - strand at 1064.282 kb on - strand at 1064.282 kb on - strand at 1064.282 kb on - strand at 1064.282 kb on - strand at 1064.289 kb on - strand at 1064.304 kb on + strand at 1064.339 kb on - strand at 1064.372 kb on - strand, within DVU0967 at 1064.382 kb on - strand, within DVU0967 at 1064.443 kb on + strand, within DVU0967 at 1064.468 kb on - strand, within DVU0967 at 1064.470 kb on + strand, within DVU0967 at 1064.542 kb on - strand, within DVU0967 at 1064.549 kb on - strand, within DVU0967 at 1064.549 kb on - strand, within DVU0967 at 1064.549 kb on - strand, within DVU0967 at 1064.661 kb on - strand, within DVU0967 at 1064.666 kb on + strand, within DVU0967 at 1064.666 kb on + strand, within DVU0967 at 1064.666 kb on + strand, within DVU0967 at 1064.666 kb on + strand, within DVU0967 at 1064.666 kb on + strand, within DVU0967 at 1064.673 kb on + strand, within DVU0967 at 1064.674 kb on - strand, within DVU0967 at 1064.752 kb on - strand, within DVU0967 at 1064.852 kb on - strand, within DVU0967 at 1064.852 kb on - strand, within DVU0967 at 1064.876 kb on + strand, within DVU0967 at 1064.982 kb on + strand, within DVU0967 at 1065.011 kb on + strand, within DVU0967 at 1065.139 kb on + strand, within DVU0967 at 1065.210 kb on + strand at 1065.210 kb on + strand at 1065.210 kb on + strand at 1065.210 kb on + strand at 1065.215 kb on + strand at 1065.218 kb on - strand at 1065.218 kb on - strand at 1065.218 kb on - strand at 1065.218 kb on - strand at 1065.218 kb on - strand at 1065.420 kb on - strand, within DVU0968 at 1065.436 kb on + strand, within DVU0968 at 1065.491 kb on + strand, within DVU0968 at 1065.554 kb on + strand, within DVU0968 at 1065.698 kb on + strand, within DVU0968 at 1065.706 kb on - strand, within DVU0968 at 1065.760 kb on - strand, within DVU0968 at 1065.760 kb on - strand, within DVU0968 at 1065.760 kb on - strand, within DVU0968 at 1065.872 kb on + strand, within DVU0968 at 1065.911 kb on - strand, within DVU0968 at 1065.928 kb on - strand, within DVU0968 at 1065.957 kb on - strand at 1065.983 kb on - strand at 1066.040 kb on - strand at 1066.143 kb on - strand at 1066.258 kb on - strand at 1066.311 kb on - strand at 1066.342 kb on - strand, within DVU0969 at 1066.387 kb on + strand, within DVU0969 at 1066.387 kb on + strand, within DVU0969 at 1066.387 kb on + strand, within DVU0969 at 1066.387 kb on + strand, within DVU0969 at 1066.387 kb on + strand, within DVU0969 at 1066.387 kb on + strand, within DVU0969 at 1066.395 kb on - strand, within DVU0969 at 1066.395 kb on - strand, within DVU0969 at 1066.405 kb on - strand, within DVU0969 at 1066.427 kb on + strand, within DVU0969 at 1066.506 kb on - strand, within DVU0969 at 1066.679 kb on - strand, within DVU0969 at 1066.845 kb on + strand, within DVU0969 at 1066.853 kb on - strand, within DVU0969 at 1066.881 kb on + strand, within DVU0969 at 1066.912 kb on + strand, within DVU0969 at 1066.920 kb on - strand, within DVU0969 at 1066.930 kb on - strand, within DVU0969
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with FCCP 10uM remove 1,064,282 - -0.6 1,064,282 - -1.7 1,064,282 - -1.0 1,064,282 - -0.8 1,064,282 - -1.7 1,064,282 - -0.7 1,064,289 - -1.5 1,064,304 + -1.0 1,064,339 - -2.8 1,064,372 - DVU0967 0.10 -1.3 1,064,382 - DVU0967 0.11 -0.8 1,064,443 + DVU0967 0.17 -0.7 1,064,468 - DVU0967 0.20 -0.8 1,064,470 + DVU0967 0.20 -1.1 1,064,542 - DVU0967 0.27 -0.8 1,064,549 - DVU0967 0.28 -1.6 1,064,549 - DVU0967 0.28 -0.6 1,064,549 - DVU0967 0.28 -1.7 1,064,661 - DVU0967 0.39 -0.7 1,064,666 + DVU0967 0.39 -1.7 1,064,666 + DVU0967 0.39 -1.3 1,064,666 + DVU0967 0.39 -0.3 1,064,666 + DVU0967 0.39 -0.8 1,064,666 + DVU0967 0.39 -2.1 1,064,673 + DVU0967 0.40 -1.9 1,064,674 - DVU0967 0.40 -2.3 1,064,752 - DVU0967 0.48 -1.8 1,064,852 - DVU0967 0.58 -0.5 1,064,852 - DVU0967 0.58 -2.0 1,064,876 + DVU0967 0.60 -1.8 1,064,982 + DVU0967 0.71 -1.3 1,065,011 + DVU0967 0.73 +1.0 1,065,139 + DVU0967 0.86 -1.5 1,065,210 + +0.6 1,065,210 + -3.5 1,065,210 + -0.3 1,065,210 + -2.5 1,065,215 + -1.3 1,065,218 - +0.2 1,065,218 - -1.0 1,065,218 - -2.0 1,065,218 - -1.2 1,065,218 - -0.5 1,065,420 - DVU0968 0.19 -0.6 1,065,436 + DVU0968 0.22 +1.0 1,065,491 + DVU0968 0.29 -1.1 1,065,554 + DVU0968 0.38 -1.4 1,065,698 + DVU0968 0.57 +0.5 1,065,706 - DVU0968 0.58 -0.4 1,065,760 - DVU0968 0.65 -1.3 1,065,760 - DVU0968 0.65 -0.2 1,065,760 - DVU0968 0.65 +0.0 1,065,872 + DVU0968 0.80 -1.0 1,065,911 - DVU0968 0.86 -1.2 1,065,928 - DVU0968 0.88 -1.5 1,065,957 - -0.9 1,065,983 - -1.6 1,066,040 - -0.5 1,066,143 - +0.3 1,066,258 - -0.1 1,066,311 - -0.3 1,066,342 - DVU0969 0.10 +1.0 1,066,387 + DVU0969 0.16 -0.5 1,066,387 + DVU0969 0.16 -0.1 1,066,387 + DVU0969 0.16 +0.3 1,066,387 + DVU0969 0.16 -0.4 1,066,387 + DVU0969 0.16 -0.2 1,066,387 + DVU0969 0.16 -0.6 1,066,395 - DVU0969 0.18 +0.5 1,066,395 - DVU0969 0.18 +1.6 1,066,405 - DVU0969 0.19 -0.8 1,066,427 + DVU0969 0.22 +0.1 1,066,506 - DVU0969 0.32 -0.0 1,066,679 - DVU0969 0.56 -0.5 1,066,845 + DVU0969 0.78 +0.2 1,066,853 - DVU0969 0.79 +0.0 1,066,881 + DVU0969 0.83 +0.4 1,066,912 + DVU0969 0.87 -0.6 1,066,920 - DVU0969 0.88 +1.3 1,066,930 - DVU0969 0.89 -0.3
Or see this region's nucleotide sequence