Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0968

Experiment: MoYLS4 with FCCP 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0967 and DVU0968 overlap by 4 nucleotidesDVU0968 and DVU0969 are separated by 247 nucleotidesDVU0969 and DVU0970 are separated by 2 nucleotides DVU0967: DVU0967 - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 1,064,266 to 1,065,279 DVU0967 DVU0968: DVU0968 - amino acid ABC transporter, ATP-binding protein (TIGR), at 1,065,276 to 1,066,016 DVU0968 DVU0969: DVU0969 - efflux protein, LysE family (TIGR), at 1,066,264 to 1,067,010 DVU0969 DVU0970: DVU0970 - lipoprotein, putative (TIGR), at 1,067,013 to 1,067,552 DVU0970 Position (kb) 1065 1066 1067Strain fitness (log2 ratio) -3 -2 -1 0 1at 1064.282 kb on - strandat 1064.282 kb on - strandat 1064.282 kb on - strandat 1064.282 kb on - strandat 1064.282 kb on - strandat 1064.282 kb on - strandat 1064.289 kb on - strandat 1064.304 kb on + strandat 1064.339 kb on - strandat 1064.372 kb on - strand, within DVU0967at 1064.382 kb on - strand, within DVU0967at 1064.443 kb on + strand, within DVU0967at 1064.468 kb on - strand, within DVU0967at 1064.470 kb on + strand, within DVU0967at 1064.542 kb on - strand, within DVU0967at 1064.549 kb on - strand, within DVU0967at 1064.549 kb on - strand, within DVU0967at 1064.549 kb on - strand, within DVU0967at 1064.661 kb on - strand, within DVU0967at 1064.666 kb on + strand, within DVU0967at 1064.666 kb on + strand, within DVU0967at 1064.666 kb on + strand, within DVU0967at 1064.666 kb on + strand, within DVU0967at 1064.666 kb on + strand, within DVU0967at 1064.673 kb on + strand, within DVU0967at 1064.674 kb on - strand, within DVU0967at 1064.752 kb on - strand, within DVU0967at 1064.852 kb on - strand, within DVU0967at 1064.852 kb on - strand, within DVU0967at 1064.876 kb on + strand, within DVU0967at 1064.982 kb on + strand, within DVU0967at 1065.011 kb on + strand, within DVU0967at 1065.139 kb on + strand, within DVU0967at 1065.210 kb on + strandat 1065.210 kb on + strandat 1065.210 kb on + strandat 1065.210 kb on + strandat 1065.215 kb on + strandat 1065.218 kb on - strandat 1065.218 kb on - strandat 1065.218 kb on - strandat 1065.218 kb on - strandat 1065.218 kb on - strandat 1065.420 kb on - strand, within DVU0968at 1065.436 kb on + strand, within DVU0968at 1065.491 kb on + strand, within DVU0968at 1065.554 kb on + strand, within DVU0968at 1065.698 kb on + strand, within DVU0968at 1065.706 kb on - strand, within DVU0968at 1065.760 kb on - strand, within DVU0968at 1065.760 kb on - strand, within DVU0968at 1065.760 kb on - strand, within DVU0968at 1065.872 kb on + strand, within DVU0968at 1065.911 kb on - strand, within DVU0968at 1065.928 kb on - strand, within DVU0968at 1065.957 kb on - strandat 1065.983 kb on - strandat 1066.040 kb on - strandat 1066.143 kb on - strandat 1066.258 kb on - strandat 1066.311 kb on - strandat 1066.342 kb on - strand, within DVU0969at 1066.387 kb on + strand, within DVU0969at 1066.387 kb on + strand, within DVU0969at 1066.387 kb on + strand, within DVU0969at 1066.387 kb on + strand, within DVU0969at 1066.387 kb on + strand, within DVU0969at 1066.387 kb on + strand, within DVU0969at 1066.395 kb on - strand, within DVU0969at 1066.395 kb on - strand, within DVU0969at 1066.405 kb on - strand, within DVU0969at 1066.427 kb on + strand, within DVU0969at 1066.506 kb on - strand, within DVU0969at 1066.679 kb on - strand, within DVU0969at 1066.845 kb on + strand, within DVU0969at 1066.853 kb on - strand, within DVU0969at 1066.881 kb on + strand, within DVU0969at 1066.912 kb on + strand, within DVU0969at 1066.920 kb on - strand, within DVU0969at 1066.930 kb on - strand, within DVU0969

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with FCCP 10uM
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1,064,282 - -0.6
1,064,282 - -1.7
1,064,282 - -1.0
1,064,282 - -0.8
1,064,282 - -1.7
1,064,282 - -0.7
1,064,289 - -1.5
1,064,304 + -1.0
1,064,339 - -2.8
1,064,372 - DVU0967 0.10 -1.3
1,064,382 - DVU0967 0.11 -0.8
1,064,443 + DVU0967 0.17 -0.7
1,064,468 - DVU0967 0.20 -0.8
1,064,470 + DVU0967 0.20 -1.1
1,064,542 - DVU0967 0.27 -0.8
1,064,549 - DVU0967 0.28 -1.6
1,064,549 - DVU0967 0.28 -0.6
1,064,549 - DVU0967 0.28 -1.7
1,064,661 - DVU0967 0.39 -0.7
1,064,666 + DVU0967 0.39 -1.7
1,064,666 + DVU0967 0.39 -1.3
1,064,666 + DVU0967 0.39 -0.3
1,064,666 + DVU0967 0.39 -0.8
1,064,666 + DVU0967 0.39 -2.1
1,064,673 + DVU0967 0.40 -1.9
1,064,674 - DVU0967 0.40 -2.3
1,064,752 - DVU0967 0.48 -1.8
1,064,852 - DVU0967 0.58 -0.5
1,064,852 - DVU0967 0.58 -2.0
1,064,876 + DVU0967 0.60 -1.8
1,064,982 + DVU0967 0.71 -1.3
1,065,011 + DVU0967 0.73 +1.0
1,065,139 + DVU0967 0.86 -1.5
1,065,210 + +0.6
1,065,210 + -3.5
1,065,210 + -0.3
1,065,210 + -2.5
1,065,215 + -1.3
1,065,218 - +0.2
1,065,218 - -1.0
1,065,218 - -2.0
1,065,218 - -1.2
1,065,218 - -0.5
1,065,420 - DVU0968 0.19 -0.6
1,065,436 + DVU0968 0.22 +1.0
1,065,491 + DVU0968 0.29 -1.1
1,065,554 + DVU0968 0.38 -1.4
1,065,698 + DVU0968 0.57 +0.5
1,065,706 - DVU0968 0.58 -0.4
1,065,760 - DVU0968 0.65 -1.3
1,065,760 - DVU0968 0.65 -0.2
1,065,760 - DVU0968 0.65 +0.0
1,065,872 + DVU0968 0.80 -1.0
1,065,911 - DVU0968 0.86 -1.2
1,065,928 - DVU0968 0.88 -1.5
1,065,957 - -0.9
1,065,983 - -1.6
1,066,040 - -0.5
1,066,143 - +0.3
1,066,258 - -0.1
1,066,311 - -0.3
1,066,342 - DVU0969 0.10 +1.0
1,066,387 + DVU0969 0.16 -0.5
1,066,387 + DVU0969 0.16 -0.1
1,066,387 + DVU0969 0.16 +0.3
1,066,387 + DVU0969 0.16 -0.4
1,066,387 + DVU0969 0.16 -0.2
1,066,387 + DVU0969 0.16 -0.6
1,066,395 - DVU0969 0.18 +0.5
1,066,395 - DVU0969 0.18 +1.6
1,066,405 - DVU0969 0.19 -0.8
1,066,427 + DVU0969 0.22 +0.1
1,066,506 - DVU0969 0.32 -0.0
1,066,679 - DVU0969 0.56 -0.5
1,066,845 + DVU0969 0.78 +0.2
1,066,853 - DVU0969 0.79 +0.0
1,066,881 + DVU0969 0.83 +0.4
1,066,912 + DVU0969 0.87 -0.6
1,066,920 - DVU0969 0.88 +1.3
1,066,930 - DVU0969 0.89 -0.3

Or see this region's nucleotide sequence