Experiment: Day4 TSB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02150 and SMc02149 are separated by 392 nucleotides SMc02149 and SMc02148 are separated by 17 nucleotides
SMc02150: SMc02150 - hypothetical protein, at 561,561 to 562,571
SMc02150
SMc02149: SMc02149 - hypothetical protein, at 562,964 to 564,124
SMc02149
SMc02148: SMc02148 - hypothetical protein, at 564,142 to 565,044
SMc02148
Position (kb) 562
563
564
565 Strain fitness (log2 ratio) -1
0
1 at 561.964 kb on + strand, within SMc02150 at 561.964 kb on + strand, within SMc02150 at 561.965 kb on - strand, within SMc02150 at 561.965 kb on - strand, within SMc02150 at 561.965 kb on - strand, within SMc02150 at 561.965 kb on - strand, within SMc02150 at 561.965 kb on - strand, within SMc02150 at 562.059 kb on + strand, within SMc02150 at 562.204 kb on + strand, within SMc02150 at 562.204 kb on + strand, within SMc02150 at 562.270 kb on + strand, within SMc02150 at 562.271 kb on - strand, within SMc02150 at 562.271 kb on - strand, within SMc02150 at 562.524 kb on + strand at 562.580 kb on + strand at 562.725 kb on - strand at 562.725 kb on - strand at 562.781 kb on + strand at 562.781 kb on + strand at 562.858 kb on - strand at 563.238 kb on + strand, within SMc02149 at 563.239 kb on - strand, within SMc02149 at 564.219 kb on - strand at 564.327 kb on + strand, within SMc02148 at 564.327 kb on + strand, within SMc02148 at 564.327 kb on + strand, within SMc02148 at 564.347 kb on + strand, within SMc02148 at 564.348 kb on - strand, within SMc02148 at 564.591 kb on - strand, within SMc02148 at 564.644 kb on + strand, within SMc02148 at 564.656 kb on + strand, within SMc02148 at 564.656 kb on + strand, within SMc02148 at 564.657 kb on - strand, within SMc02148 at 564.723 kb on + strand, within SMc02148 at 564.723 kb on + strand, within SMc02148 at 564.723 kb on + strand, within SMc02148 at 564.723 kb on + strand, within SMc02148 at 564.724 kb on - strand, within SMc02148 at 564.724 kb on - strand, within SMc02148 at 564.724 kb on - strand, within SMc02148 at 564.724 kb on - strand, within SMc02148 at 564.893 kb on + strand, within SMc02148 at 565.089 kb on + strand at 565.089 kb on + strand at 565.089 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Day4 TSB remove 561,964 + SMc02150 0.40 +0.2 561,964 + SMc02150 0.40 -0.6 561,965 - SMc02150 0.40 -0.0 561,965 - SMc02150 0.40 -0.0 561,965 - SMc02150 0.40 -0.1 561,965 - SMc02150 0.40 +0.5 561,965 - SMc02150 0.40 -0.5 562,059 + SMc02150 0.49 -0.3 562,204 + SMc02150 0.64 +0.0 562,204 + SMc02150 0.64 -0.4 562,270 + SMc02150 0.70 +0.5 562,271 - SMc02150 0.70 -0.3 562,271 - SMc02150 0.70 -0.0 562,524 + -0.2 562,580 + -0.4 562,725 - +0.2 562,725 - +0.0 562,781 + +0.7 562,781 + -0.9 562,858 - +0.1 563,238 + SMc02149 0.24 -0.5 563,239 - SMc02149 0.24 -0.7 564,219 - -0.9 564,327 + SMc02148 0.20 -0.1 564,327 + SMc02148 0.20 -0.2 564,327 + SMc02148 0.20 -0.1 564,347 + SMc02148 0.23 -0.3 564,348 - SMc02148 0.23 -0.0 564,591 - SMc02148 0.50 -0.2 564,644 + SMc02148 0.56 -0.0 564,656 + SMc02148 0.57 -1.1 564,656 + SMc02148 0.57 -0.5 564,657 - SMc02148 0.57 -0.3 564,723 + SMc02148 0.64 -0.2 564,723 + SMc02148 0.64 -0.7 564,723 + SMc02148 0.64 -0.4 564,723 + SMc02148 0.64 -0.2 564,724 - SMc02148 0.64 -0.1 564,724 - SMc02148 0.64 +0.0 564,724 - SMc02148 0.64 -0.3 564,724 - SMc02148 0.64 +0.1 564,893 + SMc02148 0.83 +0.1 565,089 + +0.2 565,089 + -1.3 565,089 + -0.0
Or see this region's nucleotide sequence