Experiment: Day4 TSB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00786 and SMc00787 are separated by 103 nucleotides SMc00787 and SMc00788 are separated by 10 nucleotides SMc00788 and SMc00789 are separated by 1 nucleotides
SMc00786: SMc00786 - periplasmic dipeptide-binding protein, at 807,487 to 809,082
SMc00786
SMc00787: SMc00787 - peptide ABC transporter permease, at 809,186 to 810,190
SMc00787
SMc00788: SMc00788 - peptide ABC transporter permease, at 810,201 to 811,109
SMc00788
SMc00789: SMc00789 - peptide ABC transporter ATP-binding protein, at 811,111 to 811,965
SMc00789
Position (kb) 809
810
811 Strain fitness (log2 ratio) -1
0
1 at 808.322 kb on - strand, within SMc00786 at 808.354 kb on + strand, within SMc00786 at 808.354 kb on + strand, within SMc00786 at 808.354 kb on + strand, within SMc00786 at 808.364 kb on - strand, within SMc00786 at 808.364 kb on - strand, within SMc00786 at 808.507 kb on + strand, within SMc00786 at 808.510 kb on - strand, within SMc00786 at 808.520 kb on + strand, within SMc00786 at 808.534 kb on + strand, within SMc00786 at 808.534 kb on + strand, within SMc00786 at 808.534 kb on + strand, within SMc00786 at 808.534 kb on + strand, within SMc00786 at 808.534 kb on + strand, within SMc00786 at 808.534 kb on + strand, within SMc00786 at 808.624 kb on + strand, within SMc00786 at 808.625 kb on - strand, within SMc00786 at 808.706 kb on - strand, within SMc00786 at 808.706 kb on - strand, within SMc00786 at 808.720 kb on + strand, within SMc00786 at 808.930 kb on + strand at 808.930 kb on + strand at 808.931 kb on - strand at 809.070 kb on + strand at 809.075 kb on + strand at 809.075 kb on + strand at 809.075 kb on + strand at 809.076 kb on - strand at 809.076 kb on - strand at 809.080 kb on + strand at 809.080 kb on + strand at 809.081 kb on - strand at 809.081 kb on - strand at 809.087 kb on - strand at 809.156 kb on - strand at 809.185 kb on + strand at 809.185 kb on + strand at 809.185 kb on + strand at 809.185 kb on + strand at 809.186 kb on - strand at 809.381 kb on + strand, within SMc00787 at 809.381 kb on + strand, within SMc00787 at 809.390 kb on + strand, within SMc00787 at 809.745 kb on + strand, within SMc00787 at 809.882 kb on + strand, within SMc00787 at 809.882 kb on + strand, within SMc00787 at 809.882 kb on + strand, within SMc00787 at 809.882 kb on + strand, within SMc00787 at 809.883 kb on - strand, within SMc00787 at 809.883 kb on - strand, within SMc00787 at 810.083 kb on + strand, within SMc00787 at 810.083 kb on + strand, within SMc00787 at 810.093 kb on + strand at 810.093 kb on + strand at 810.094 kb on - strand at 810.094 kb on - strand at 810.094 kb on - strand at 810.094 kb on - strand at 810.114 kb on + strand at 810.200 kb on + strand at 810.201 kb on - strand at 810.201 kb on - strand at 810.229 kb on + strand at 810.274 kb on - strand at 810.489 kb on + strand, within SMc00788 at 810.489 kb on + strand, within SMc00788 at 810.490 kb on - strand, within SMc00788 at 810.490 kb on - strand, within SMc00788 at 810.777 kb on + strand, within SMc00788 at 810.778 kb on - strand, within SMc00788 at 811.028 kb on + strand at 811.028 kb on + strand at 811.084 kb on + strand at 811.085 kb on - strand at 811.085 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Day4 TSB remove 808,322 - SMc00786 0.52 +0.6 808,354 + SMc00786 0.54 +1.0 808,354 + SMc00786 0.54 +1.1 808,354 + SMc00786 0.54 +1.1 808,364 - SMc00786 0.55 +0.8 808,364 - SMc00786 0.55 +0.8 808,507 + SMc00786 0.64 +0.6 808,510 - SMc00786 0.64 +1.0 808,520 + SMc00786 0.65 +1.0 808,534 + SMc00786 0.66 +0.3 808,534 + SMc00786 0.66 +0.6 808,534 + SMc00786 0.66 +0.7 808,534 + SMc00786 0.66 +0.5 808,534 + SMc00786 0.66 +0.5 808,534 + SMc00786 0.66 +1.1 808,624 + SMc00786 0.71 +1.2 808,625 - SMc00786 0.71 +0.9 808,706 - SMc00786 0.76 +0.9 808,706 - SMc00786 0.76 +0.8 808,720 + SMc00786 0.77 +0.9 808,930 + +0.9 808,930 + +0.9 808,931 - +0.6 809,070 + +1.3 809,075 + +0.8 809,075 + +0.3 809,075 + +0.2 809,076 - +1.0 809,076 - +1.2 809,080 + -0.1 809,080 + +0.8 809,081 - +0.9 809,081 - +0.8 809,087 - +1.0 809,156 - +1.1 809,185 + -0.1 809,185 + +0.0 809,185 + +1.5 809,185 + +0.1 809,186 - +0.9 809,381 + SMc00787 0.19 +0.4 809,381 + SMc00787 0.19 +0.9 809,390 + SMc00787 0.20 -0.3 809,745 + SMc00787 0.56 +1.1 809,882 + SMc00787 0.69 +1.5 809,882 + SMc00787 0.69 +0.3 809,882 + SMc00787 0.69 +0.7 809,882 + SMc00787 0.69 +1.1 809,883 - SMc00787 0.69 +1.4 809,883 - SMc00787 0.69 +1.0 810,083 + SMc00787 0.89 +0.6 810,083 + SMc00787 0.89 +1.1 810,093 + +1.5 810,093 + +0.8 810,094 - +1.1 810,094 - +0.8 810,094 - +1.5 810,094 - +0.5 810,114 + +1.4 810,200 + +0.6 810,201 - +0.7 810,201 - +0.7 810,229 + +0.6 810,274 - +1.1 810,489 + SMc00788 0.32 +0.8 810,489 + SMc00788 0.32 +1.1 810,490 - SMc00788 0.32 +0.5 810,490 - SMc00788 0.32 +1.1 810,777 + SMc00788 0.63 +0.7 810,778 - SMc00788 0.63 +0.4 811,028 + +0.4 811,028 + +0.8 811,084 + +1.0 811,085 - +1.2 811,085 - +0.7
Or see this region's nucleotide sequence