Experiment: Day4 TSB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1209 and SMa1210 overlap by 4 nucleotides SMa1210 and SMa1211 overlap by 4 nucleotides SMa1211 and SMa1213 are separated by 228 nucleotides
SMa1209: SMa1209 - FixI1 ATPase, at 662,787 to 665,060
SMa1209
SMa1210: SMa1210 - nitrogen fixation protein FixH, at 665,057 to 665,560
SMa1210
SMa1211: SMa1211 - FixG iron sulfur membrane protein, at 665,557 to 667,131
SMa1211
SMa1213: SMa1213 - FixP1 di-heme cytochrome c, at 667,360 to 668,229
SMa1213
Position (kb) 665
666
667
668 Strain fitness (log2 ratio) -1
0
1 at 664.794 kb on - strand, within SMa1209 at 664.794 kb on - strand, within SMa1209 at 664.921 kb on + strand at 664.938 kb on + strand at 664.939 kb on - strand at 665.042 kb on + strand at 665.042 kb on + strand at 665.400 kb on + strand, within SMa1210 at 665.400 kb on + strand, within SMa1210 at 665.401 kb on - strand at 665.401 kb on - strand, within SMa1210 at 665.806 kb on - strand, within SMa1211 at 665.806 kb on - strand, within SMa1211 at 665.849 kb on + strand, within SMa1211 at 665.849 kb on + strand, within SMa1211 at 665.849 kb on + strand, within SMa1211 at 665.850 kb on - strand, within SMa1211 at 666.125 kb on + strand, within SMa1211 at 666.126 kb on - strand, within SMa1211 at 666.369 kb on - strand, within SMa1211 at 666.394 kb on + strand at 666.394 kb on + strand, within SMa1211 at 666.395 kb on - strand, within SMa1211 at 666.429 kb on + strand, within SMa1211 at 666.429 kb on + strand, within SMa1211 at 666.429 kb on + strand, within SMa1211 at 666.429 kb on + strand, within SMa1211 at 666.429 kb on + strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.431 kb on + strand, within SMa1211 at 666.431 kb on + strand, within SMa1211 at 666.431 kb on + strand, within SMa1211 at 666.431 kb on + strand, within SMa1211 at 666.431 kb on + strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.470 kb on + strand, within SMa1211 at 666.471 kb on - strand, within SMa1211 at 666.533 kb on - strand, within SMa1211 at 666.566 kb on + strand, within SMa1211 at 666.567 kb on - strand, within SMa1211 at 666.567 kb on - strand at 666.567 kb on - strand, within SMa1211 at 666.637 kb on + strand, within SMa1211 at 666.870 kb on - strand, within SMa1211 at 666.953 kb on + strand, within SMa1211 at 666.953 kb on + strand, within SMa1211 at 666.956 kb on + strand, within SMa1211 at 667.151 kb on - strand at 667.361 kb on + strand at 667.653 kb on - strand, within SMa1213 at 667.653 kb on - strand, within SMa1213 at 667.758 kb on + strand, within SMa1213 at 667.767 kb on - strand, within SMa1213 at 667.767 kb on - strand, within SMa1213 at 667.767 kb on - strand, within SMa1213 at 668.085 kb on - strand, within SMa1213 at 668.112 kb on - strand at 668.120 kb on + strand, within SMa1213
Per-strain Table
Position Strand Gene LocusTag Fraction Day4 TSB remove 664,794 - SMa1209 0.88 -0.1 664,794 - SMa1209 0.88 +0.4 664,921 + -0.8 664,938 + +0.2 664,939 - +0.2 665,042 + +1.7 665,042 + -0.3 665,400 + SMa1210 0.68 +0.1 665,400 + SMa1210 0.68 -1.4 665,401 - +0.6 665,401 - SMa1210 0.68 +0.5 665,806 - SMa1211 0.16 -0.8 665,806 - SMa1211 0.16 +0.2 665,849 + SMa1211 0.19 +0.3 665,849 + SMa1211 0.19 +0.1 665,849 + SMa1211 0.19 -0.3 665,850 - SMa1211 0.19 +0.2 666,125 + SMa1211 0.36 +0.2 666,126 - SMa1211 0.36 +0.4 666,369 - SMa1211 0.52 +0.5 666,394 + -1.1 666,394 + SMa1211 0.53 +1.0 666,395 - SMa1211 0.53 -0.0 666,429 + SMa1211 0.55 +0.2 666,429 + SMa1211 0.55 +0.5 666,429 + SMa1211 0.55 -0.2 666,429 + SMa1211 0.55 +0.1 666,429 + SMa1211 0.55 +0.1 666,430 - SMa1211 0.55 -0.3 666,430 - SMa1211 0.55 +1.6 666,430 - SMa1211 0.55 +0.8 666,430 - SMa1211 0.55 -0.3 666,430 - SMa1211 0.55 +0.1 666,430 - SMa1211 0.55 +0.1 666,431 + SMa1211 0.55 +0.2 666,431 + SMa1211 0.55 +0.4 666,431 + SMa1211 0.55 +0.4 666,431 + SMa1211 0.55 +1.0 666,431 + SMa1211 0.55 -0.3 666,432 - SMa1211 0.56 -0.0 666,432 - SMa1211 0.56 +0.4 666,432 - SMa1211 0.56 -0.4 666,432 - SMa1211 0.56 +0.5 666,432 - SMa1211 0.56 +1.1 666,432 - SMa1211 0.56 -0.1 666,470 + SMa1211 0.58 -0.0 666,471 - SMa1211 0.58 -0.3 666,533 - SMa1211 0.62 -0.4 666,566 + SMa1211 0.64 +0.1 666,567 - SMa1211 0.64 -0.1 666,567 - +1.0 666,567 - SMa1211 0.64 +0.7 666,637 + SMa1211 0.69 +0.2 666,870 - SMa1211 0.83 +1.0 666,953 + SMa1211 0.89 +0.2 666,953 + SMa1211 0.89 +0.1 666,956 + SMa1211 0.89 -0.1 667,151 - +0.1 667,361 + -0.2 667,653 - SMa1213 0.34 +0.6 667,653 - SMa1213 0.34 +0.4 667,758 + SMa1213 0.46 -0.2 667,767 - SMa1213 0.47 +0.4 667,767 - SMa1213 0.47 +0.4 667,767 - SMa1213 0.47 +0.6 668,085 - SMa1213 0.83 +0.4 668,112 - +1.4 668,120 + SMa1213 0.87 -0.0
Or see this region's nucleotide sequence