Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06464

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06463 and H281DRAFT_06464 are separated by 101 nucleotides H281DRAFT_06463: H281DRAFT_06463 - transposase, IS4 family, at 70,913 to 72,034 _06463 H281DRAFT_06464: H281DRAFT_06464 - hypothetical protein, at 72,136 to 72,228 _06464 Position (kb) 72 73Strain fitness (log2 ratio) -1 0 1at 71.326 kb on - strand, within H281DRAFT_06463at 71.338 kb on - strand, within H281DRAFT_06463at 71.400 kb on - strand, within H281DRAFT_06463at 71.481 kb on + strandat 71.482 kb on - strand, within H281DRAFT_06463at 71.482 kb on - strand, within H281DRAFT_06463at 71.786 kb on + strand, within H281DRAFT_06463at 71.787 kb on - strand, within H281DRAFT_06463at 71.880 kb on + strand, within H281DRAFT_06463at 71.881 kb on - strand, within H281DRAFT_06463at 71.881 kb on - strand, within H281DRAFT_06463at 72.066 kb on + strandat 72.144 kb on + strandat 72.145 kb on - strandat 72.145 kb on - strandat 72.145 kb on - strandat 72.152 kb on + strand, within H281DRAFT_06464at 72.152 kb on + strand, within H281DRAFT_06464at 72.153 kb on - strand, within H281DRAFT_06464at 72.153 kb on - strand, within H281DRAFT_06464at 72.190 kb on + strand, within H281DRAFT_06464at 72.190 kb on + strand, within H281DRAFT_06464at 72.190 kb on + strand, within H281DRAFT_06464at 72.190 kb on + strand, within H281DRAFT_06464at 72.190 kb on + strand, within H281DRAFT_06464at 72.190 kb on + strand, within H281DRAFT_06464at 72.190 kb on + strand, within H281DRAFT_06464at 72.191 kb on - strand, within H281DRAFT_06464at 72.191 kb on - strand, within H281DRAFT_06464at 72.191 kb on - strand, within H281DRAFT_06464

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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71,326 - H281DRAFT_06463 0.37 +0.7
71,338 - H281DRAFT_06463 0.38 +0.5
71,400 - H281DRAFT_06463 0.43 +0.7
71,481 + +1.1
71,482 - H281DRAFT_06463 0.51 +0.6
71,482 - H281DRAFT_06463 0.51 +1.0
71,786 + H281DRAFT_06463 0.78 -0.2
71,787 - H281DRAFT_06463 0.78 +0.1
71,880 + H281DRAFT_06463 0.86 +0.1
71,881 - H281DRAFT_06463 0.86 -0.3
71,881 - H281DRAFT_06463 0.86 +0.1
72,066 + -0.6
72,144 + -0.7
72,145 - +0.4
72,145 - +0.3
72,145 - +0.0
72,152 + H281DRAFT_06464 0.17 +0.3
72,152 + H281DRAFT_06464 0.17 +0.2
72,153 - H281DRAFT_06464 0.18 -0.0
72,153 - H281DRAFT_06464 0.18 +0.4
72,190 + H281DRAFT_06464 0.58 +0.3
72,190 + H281DRAFT_06464 0.58 +0.3
72,190 + H281DRAFT_06464 0.58 +0.4
72,190 + H281DRAFT_06464 0.58 +0.7
72,190 + H281DRAFT_06464 0.58 +0.3
72,190 + H281DRAFT_06464 0.58 -0.8
72,190 + H281DRAFT_06464 0.58 +0.0
72,191 - H281DRAFT_06464 0.59 -0.0
72,191 - H281DRAFT_06464 0.59 -0.1
72,191 - H281DRAFT_06464 0.59 -0.9

Or see this region's nucleotide sequence